BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZA01FM1.SCF screened BAC_end
         (885 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1600                                                        1015   0.0  

>3x_Contig1600 
          Length = 9359

 Score = 1015 bits (512), Expect = 0.0
 Identities = 575/588 (97%), Gaps = 6/588 (1%)
 Strand = Plus / Minus

                                                                        
Query: 76   ttgatcttcttttttaaaggtcctgcatcttgttttaccggtttcgcttctttctcttca 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2397 ttgatcttcttttttaaaggtcctgcatcttgttttaccggtttcgcttctttctcttca 2338

                                                                        
Query: 136  cccaattccgactcctcttcaggagtagtcgaaggagtagcgacaacctttctcctagaa 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2337 cccaattccgactcctcttcaggagtagtcgaaggagtagcgacaacctttctcctagaa 2278

                                                                        
Query: 196  cgagttct-ccattttcacgagcaggagttacggcttgctcagcagatattacagtattg 254
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 cgagttctaccattttcacgagcaggagttacggcttgctcagcagatattacagtattg 2218

                                                                        
Query: 255  gatgttgaggaagattcttcaggctcaacgctattttctagactttccaatcctaattgt 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 gatgttgaggaagattcttcaggctcaacgctattttctagactttccaatcctaattgt 2158

                                                                        
Query: 315  tttctttgacgtttttcacgagcagctctttgacgttcaatggtttcatctaagtcctca 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2157 tttctttgacgtttttcacgagcagctctttgacgttcaatggtttcatctaagtcctca 2098

                                                                        
Query: 375  tcattatcgacagcttgtaaccattgttcctctgttaaaccatcatcgtaatagactctc 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2097 tcattatcgacagcttgtaaccattgttcctctgttaaaccatcatcgtaatagactctc 2038

                                                                        
Query: 435  tttctttctctgattctgccaatagcagcaggctcaacattcaaatggtcagtgatatct 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 tttctttctctgattctgccaatagcagcaggctcaacattcaaatggtcagtgatatct 1978

                                                                        
Query: 495  tcagtgaatactgaaggtaactcttcccttggtgatcaacctcggcagtggctttctcaa 554
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1977 tcagtgaatactgaaggtaactctt-ccttggtgatcaacctcggcagtggctttctcaa 1919

                                                                        
Query: 555  acctaaaacgaagggttctctcttctcattagctacacgtttctttattcaatctttttg 614
            ||||||| ||| || |||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct: 1918 acctaaatcgatggcttctctcttctcattagctacacg-ttcttca-tcaatctttttg 1861

                                                            
Query: 615  aacagcacttttctcgtcttcagtccgcgccgaaaatttcatttaatt 662
            |||||||| ||||||||||||||| || | ||| ||||||||||||||
Sbjct: 1860 aacagcac-tttctcgtcttcagtacgtg-cgagaatttcatttaatt 1815


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7449
Number of Sequences: 1807
Number of extensions: 7449
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)