BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA02FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig914 900 0.0
3x_Contig226 630 e-180
>3x_Contig914
Length = 2833
Score = 900 bits (454), Expect = 0.0
Identities = 514/530 (96%), Gaps = 3/530 (0%)
Strand = Plus / Plus
Query: 376 ccgtttatattatgtattatgtttcgtatcttctttccaatctcctattctttatctggg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 ccgtttatattatgtattatgtttcgtatcttctttccaatctcctattctttatctggg 73
Query: 436 gatctggagtttataaatgaatcaaattaaagaacgaaaaaacacagacggtttaaccaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gatctggagtttataaatgaatcaaattaaagaacgaaaaaacacagacggtttaaccaa 133
Query: 496 aaaatcctttaatatcaaacaaaaagggcgaagaaaaaaaaactcgatagttgacagaat 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aaaatcctttaatatcaaacaaaaagggcgaagaaaaaaaaactcgatagttgacagaat 193
Query: 556 atggtgctataaagtatcgatgcaattcctgaagcaggttttaagcttggaatgaattgg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 atggtgctataaagtatcgatgcaattcctgaagcaggttttaagcttggaatgaattgg 253
Query: 616 cgtaggtccagcaataatcttgtaatgtcttgtattttgtaacgacgcagattacaatac 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cgtaggtccagcaataatcttgtaatgtcttgtattttgtaacgacgcagattacaatac 313
Query: 676 atatatatatatatatatgtatatgactggtagagacagaaatgtgatcatatggaattg 735
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 314 atatatatatatatatatgtatatgactggtagagacagaaatgtgatcatatggaatag 373
Query: 736 cctataggaaccagaaatatacaggattggtagtgtgagatactggctttgggtggtttg 795
| |||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 374 catataagaacaagaaatatacaggattggtagtgtgagatactggctttgtgtggtttg 433
Query: 796 atccgagtgaaaaattcccaa-gcttccatttgtttgggc-cattttcgtgcgccttatt 853
||| |||||||||||||||| ||| |||| ||||||||| ||| ||||||||||| |||
Sbjct: 434 atcgaagtgaaaaattcccaatgctaccatctgtttgggcacatcttcgtgcgcctcatt 493
Query: 854 ttagggcggatggacgaaatttcatcgaaat-aagctgaaagcctgattt 902
|||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 494 ctagggcggatggacgaaatttcatcgaaatcaggctgaaagcctgattt 543
>3x_Contig226
Length = 1863
Score = 630 bits (318), Expect = e-180
Identities = 318/318 (100%)
Strand = Plus / Minus
Query: 90 ccttgacgaccaagttcttaccacccaattccttggcaatcttggtagcctcatcgacgg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccttgacgaccaagttcttaccacccaattccttggcaatcttggtagcctcatcgacgg 263
Query: 150 tatgagcagctgcaccttttggagtaccaacgccgtattgtctcaacagttcagccgaac 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgagcagctgcaccttttggagtaccaacgccgtattgtctcaacagttcagccgaac 203
Query: 210 ggtattcgtggatggacaagtttctaacttgttgacgaacaacagaagaagacttgtgca 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggtattcgtggatggacaagtttctaacttgttgacgaacaacagaagaagacttgtgca 143
Query: 270 aacagcttcttaatttgtaagcttgcgacaacatagtgtatgataattctatagtagttc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aacagcttcttaatttgtaagcttgcgacaacatagtgtatgataattctatagtagttc 83
Query: 330 acggagtgagagaagacagtttcgttaagccaaaaaaaaaaagacaccgtttatattatg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 acggagtgagagaagacagtttcgttaagccaaaaaaaaaaagacaccgtttatattatg 23
Query: 390 tattatgtttcgtatctt 407
||||||||||||||||||
Sbjct: 22 tattatgtttcgtatctt 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,656
Number of Sequences: 1807
Number of extensions: 17656
Number of successful extensions: 1910
Number of sequences better than 1.0e-20: 2
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)