BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA02RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1681 0.0
>3x_Contig1763
Length = 22654
Score = 1681 bits (848), Expect = 0.0
Identities = 870/875 (99%), Gaps = 2/875 (0%)
Strand = Plus / Minus
Query: 47 ttagatcctaagacggttagctatattttcccagtggcaagacatatcgggttctgtgcc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9243 ttagatcctaagacggttagctatattttcccagtggcaagacatatcgggttctgtgcc 9184
Query: 107 -caggaccggttccagatgccagaaatattgcattgagatgtaaagccgaagctagtgag 165
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9183 acaggaccggttccagatgccagaaatattgcattgagatgtaaagccgaagctagtgag 9124
Query: 166 tttcgttataaatatgggtatgatatcccatgctccgtactagctaaaagaatggccaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9123 tttcgttataaatatgggtatgatatcccatgctccgtactagctaaaagaatggccaat 9064
Query: 226 ttgtcgcaaatatacacacaaagagcttacatgagaccattagggattattttgactttt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9063 ttgtcgcaaatatacacacaaagagcttacatgagaccattagggattattttgactttt 9004
Query: 286 atttcgtacgatgaggaaacaggacctgctattttcaaatgtgaccctgctggttactat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9003 atttcgtacgatgaggaaacaggacctgctattttcaaatgtgaccctgctggttactat 8944
Query: 346 acggggtacaaggctactgccactggcccaaaacagcaggagttgaactctgctttggag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8943 acggggtacaaggctactgccactggcccaaaacagcaggagttgaactctgctttggag 8884
Query: 406 aagcatttcaagaagttaaaggacgataaaatcgatgaggaaagttgggaaaaaaccgtt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8883 aagcatttcaagaagttaaaggacgataaaatcgatgaggaaagttgggaaaaaaccgtt 8824
Query: 466 gagttcggtatcactaccctaattgactcattaggaacagatttcagcaaaaatgatcta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8823 gagttcggtatcactaccctaattgactcattaggaacagatttcagcaaaaatgatcta 8764
Query: 526 gaagttggtgtagcgattaaggataaattctttacgctaacagctgatgaaattgaggaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8763 gaagttggtgtagcgattaaggataaattctttacgctaacagctgatgaaattgaggaa 8704
Query: 586 agattggtctctattgctgaacaagattaaggtagaaaatttctttccccctcatataaa 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8703 agattggtctctattgctgaacaagattaaggtagaaaatttctttccccctcatataaa 8644
Query: 646 tatataattcaaaacaatatcacttattgtagttccaacatcaaatctcatacaagctac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8643 tatataattcaaaacaatatcacttattgtagttccaacatcaaatctcatacaagctac 8584
Query: 706 tcttgaatgttgaggtatttgaaatcattcagcgactaatggttcaataaatgttacaat 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8583 tcttgaatgttgaggtatttgaaatcattcagcgactaatggttcaataaatgttacaat 8524
Query: 766 tttcagctatacatataaaagtatatatgtatatataggtatttggagaatcttcttaaa 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8523 tttcagctatacatataaaagtatatatgtatatataggtatttggagaatcttcttaaa 8464
Query: 826 aaagntcatagtctaaaattcgtatggccacaagcatcagctgtcagtatcgtgttcagt 885
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8463 agagttcatagtctaaaattcgtatggccacaagcatcagctgtcagtatcgtgttcagt 8404
Query: 886 tcactttcctttgcctatcaaataacatcatcatg 920
|||| |||| |||||||||||||||||||||||||
Sbjct: 8403 tcac-ttcccttgcctatcaaataacatcatcatg 8370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7360
Number of Sequences: 1807
Number of extensions: 7360
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)