BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA03RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1602 0.0
>3x_Contig1768
Length = 25668
Score = 1602 bits (808), Expect = 0.0
Identities = 869/884 (98%), Gaps = 4/884 (0%)
Strand = Plus / Minus
Query: 46 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24677 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 24618
Query: 106 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24617 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 24558
Query: 166 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24557 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 24498
Query: 226 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24497 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 24438
Query: 286 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24437 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 24378
Query: 346 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24377 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 24318
Query: 406 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24317 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 24258
Query: 466 gtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaatcctga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24257 gtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaatcctga 24198
Query: 526 atggttttaaggttttgttaattcaatattataggtattttgatattgaaggaaatcctt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24197 atggttttaaggttttgttaattcaatattataggtattttgatattgaaggaaatcctt 24138
Query: 586 tccaaatgggtattttaaactactaaatgaagatgggaaacacgctacctagttcattgc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24137 tccaaatgggtattttaaactactaaatgaagatgggaaacacgctacctagttcattgc 24078
Query: 646 attcagttcatatgacaattgtctatattctttgttatagtgtctaaagttgactgatct 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24077 attcagttcatatgacaattgtctatattctttgttatagtgtctaaagttgactgatct 24018
Query: 706 tctaaagcatctattcattatttcttcatttagtcttaaat-acaacttccaaagtgaca 764
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 24017 tctaaagcatctattcattatttcttcatttagtcttaaataacaacttccaaagtgaca 23958
Query: 765 tctgaagtcaaaatgtacagggatt-aaaaatgctatatgagagcagttgaaaggactct 823
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 23957 tctgaagtcaaaatgtacaaggattaaaaaatgctatatgagagcagttgaaaggactct 23898
Query: 824 tcatgaaacattcgaatatggaaaagaagctgaagcattctatacgtttaaacagctacc 883
|||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |
Sbjct: 23897 tcatgaaacattcgaatatggaaatgaagctgaagcatcctatacg-ttaaacagcatac 23839
Query: 884 ttctttggtaaatgcctggatccaatcatttcctagccgattta 927
|||||| |||||||||| ||||| |||||| |||| |||||||
Sbjct: 23838 ttcttttgtaaatgcct-gatcccatcattccctaagcgattta 23796
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9652
Number of Sequences: 1807
Number of extensions: 9652
Number of successful extensions: 279
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)