BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA04RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1170 0.0
>3x_Contig1509
Length = 8584
Score = 1170 bits (590), Expect = 0.0
Identities = 658/670 (98%), Gaps = 8/670 (1%)
Strand = Plus / Plus
Query: 48 tgttgacctctttggaaggtaagaccatccaagaattggttgctgaaggtcaaaccaagt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6742 tgttgacctctttggaaggtaagaccatccaagaattggttgctgaaggtcaaaccaagt 6801
Query: 108 tggcttctgtcccagctggtggtgcctctggtgctgctgctgcttctggtgctgctggcg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6802 tggcttctgtcccagctggtggtgcctctggtgctgctgctgcttctggtgctgctggcg 6861
Query: 168 cttctgctgaagaagaaaaggaagaagaaaaggaagaagaaaaggaagaatctgacgatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6862 cttctgctgaagaagaaaaggaagaagaaaaggaagaagaaaaggaagaatctgacgatg 6921
Query: 228 acatgggtttcggtctattcgattaaaaaatcaaagctactcgttaactaaaccttcttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6922 acatgggtttcggtctattcgattaaaaaatcaaagctactcgttaactaaaccttcttt 6981
Query: 288 tatgtcattcccagtcgaaaattttcgatgcagatatttgtattctaacagttgtgaagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6982 tatgtcattcccagtcgaaaattttcgatgcagatatttgtattctaacagttgtgaagt 7041
Query: 348 gaaccgcattttaaagcttattcactcttcctttggagattgtcactaagttcaataatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7042 gaaccgcattttaaagcttattcactcttcctttggagattgtcactaagttcaataatt 7101
Query: 408 atgtgtaatcatcgtttaatatgtagaaataaaatatctatacttcacttttttttcaag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7102 atgtgtaatcatcgtttaatatgtagaaataaaatatctatacttcacttttttttcaag 7161
Query: 468 ctcgctgtttgtcttcattcgatattatctttgatgtgcaatatcgatttcaatgaacta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7162 ctcgctgtttgtcttcattcgatattatctttgatgtgcaatatcgatttcaatgaacta 7221
Query: 528 gagtcgattagctgtaagagtttggatcgcttttcttctgttaaatcaggccaagttttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7222 gagtcgattagctgtaagagtttggatcgcttttcttctgttaaatcaggccaagttttc 7281
Query: 588 aaaattaattcgagatttttagccagttctttccattccattttggatctcatcttcgcc 647
||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 7282 aaaattaattcgagattttgagccagttctttccattcca-tttggatctcatc-tcgcc 7339
Query: 648 attgtcttcaattccccaacggattaacagggaatttgatatcctcggtaaattaacatc 707
|||||| ||| |||| ||||||| ||||| |||| |||||||||| ||| ||||||||||
Sbjct: 7340 attgtc-tcagttccacaacgga-taacatggaa-ttgatatcct-ggt-aattaacatc 7394
Query: 708 aagtatttgt 717
|||||||||
Sbjct: 7395 -agtatttgt 7403
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9621
Number of Sequences: 1807
Number of extensions: 9621
Number of successful extensions: 262
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)