BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA06RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1397 1558 0.0
>3x_Contig1397
Length = 8011
Score = 1558 bits (786), Expect = 0.0
Identities = 872/896 (97%), Gaps = 4/896 (0%)
Strand = Plus / Plus
Query: 34 agcttttatctct-aaaataattctttacaaaatttgaatttgcaaagtgacgctcttca 92
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3490 agcttttatctctcaaaataattctttacaaaatttgaatttgcaaagtgacgctcttca 3549
Query: 93 atgaggtgggaacacgtcctatgataaaatccgtcaacaaaaatgttcgatagaattaat 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3550 atgaggtgggaacacgtcctatgataaaatccgtcaacaaaaatgttcgatagaattaat 3609
Query: 153 agctgaaattgtttctttaactccttcactctctaaactaagtagcaaaaactaggagaa 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3610 agctgaaattgtttctttaactccttcactctctaaactaagtagcaaaaactaggagaa 3669
Query: 213 aaagatccaaagacacgcagcggctttccaaaagaaaactaggacagataaaacaggatt 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3670 aaagatccaaagacacgcagcggctttccaaaagaaaactaggacagataaaacaggatt 3729
Query: 273 atctaaccgaaaaccaacacagatccaactgaactgaatcaagtacaggaaatccgaaga 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3730 atctaaccgaaaaccaacacagatccaactgaactgaatcaagtacaggaaatccgaaga 3789
Query: 333 atattctgtatttcaaatcaaataaaaccaactcacaaacaccgtttattaaacaagtga 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3790 atattctgtatttcaaatcaaataaaaccaactcacaaacaccgtttattaaacaagtga 3849
Query: 393 tggatggtggattaaaaaaaaaagaaaaaaagatgagggaaaagaggatgatatatggtt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3850 tggatggtggattaaaaaaaaaagaaaaaaagatgagggaaaagaggatgatatatggtt 3909
Query: 453 cggcctggtgaatgtaatacttccccgagtcctaataatatatcccttgagtgatgaaga 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3910 cggcctggtgaatgtaatacttccccgagtcctaataatatatcccttgagtgatgaaga 3969
Query: 513 actttgtccgttgaccttctgaaaacctcatcaaaaagatacctaactgtacgtacacaa 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3970 actttgtccgttgaccttctgaaaacctcatcaaaaagatacctaactgtacgtacacaa 4029
Query: 573 aataacaagcatttaaactatataggttgaaatttatatatttttctcttggtntttttt 632
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 4030 aataacaagcatttaaactatataggttgaaatttatatatttttctcttgttttttttt 4089
Query: 633 ctttcattttgaccaatcgaagaaaaagaaaaagaacttcgtttctaagtggaaacttaa 692
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 4090 ctttcattttgacaaatcgaagaaaaagaaaaagaacttcgttctaaagtggaaacttaa 4149
Query: 693 tgagctttaagttagttcagctgaaatatactgactgacattcagaaaaactgaaaatgt 752
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4150 tgagctttaagttagttcagctgaaatatactgactgacattcagaaaaactgaaattgt 4209
Query: 753 tctagttacaaagacacgaagtnggaaaaaaggaaaaggaagcgaaaaattataagattg 812
|||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct: 4210 tctagttacaaagacacgaagtagggaaaaaggaaaaagaagcgaaaaattataagattg 4269
Query: 813 tgaggtctgaaaactgggaaatcgaatc-ataccgggtttgatgaatcatgatcccgaaa 871
||||||||||||||||| || ||||||| |||||||||| |||||||||||||| ||||
Sbjct: 4270 tgaggtctgaaaactggaaattcgaatcaataccgggttgaatgaatcatgatccagaaa 4329
Query: 872 gaatccagc-aacagagaaatttttttcctg-ggcagcatccgctgcgggggttct 925
|||| |||| |||||||||| |||||| ||| | ||||||||||||||||| ||||
Sbjct: 4330 gaatacagcaaacagagaaaatttttttctgtgtcagcatccgctgcggggtttct 4385
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,585
Number of Sequences: 1807
Number of extensions: 11585
Number of successful extensions: 228
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)