BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA07RM1.SCF screened BAC_end
(860 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1499 0.0
3x_Contig1493 139 1e-32
>3x_Contig1571
Length = 13536
Score = 1499 bits (756), Expect = 0.0
Identities = 780/788 (98%)
Strand = Plus / Plus
Query: 47 ctaccactcttgatgccgatgaacttgaaactgtcactttgactttgtctaagaatggtc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12357 ctaccactcttgatgccgatgaacttgaaactgtcactttgactttgtctaagaatggtc 12416
Query: 107 actggttcactaagaccgtcactcaaactaagggtttcgtctggaccggtgaaccatcta 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12417 actggttcactaagaccgtcactcaaactaagggtttcgtctggaccggtgaaccatcta 12476
Query: 167 gatcggctgccacaacctccgctgaagaaacttcttctactgaagaagcctctaccactg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12477 gatcggctgccacaacctccgctgaagaaacttcttctactgaagaagcctctaccactg 12536
Query: 227 aatacgaaactaagactctaactttgtccaagaacggtcactggttcactaagactgtca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12537 aatacgaaactaagactctaactttgtccaagaacggtcactggttcactaagactgtca 12596
Query: 287 cccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgttgctccat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12597 cccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgttgctccat 12656
Query: 347 gggctagtagttctgctgaagaggcctcttcaactgaagaagcctctaccactcttgatg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12657 gggctagtagttctgctgaagaggcctcttcaactgaagaagcctctaccactcttgatg 12716
Query: 407 ccgatgaacttgaaactgtcactttgactttgtctaagaatggtcattggttcactaaga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12717 ccgatgaacttgaaactgtcactttgactttgtctaagaatggtcattggttcactaaga 12776
Query: 467 ccgtcactcaaactaagggtttcgtatggaccggcgaaccatctagatcagctactgcat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12777 ccgtcactcaaactaagggtttcgtatggaccggcgaaccatctagatcagctactgcat 12836
Query: 527 cttctgatgattctaacgatgacattacctcttactcaaactctaccgcatcagcaactg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12837 cttctgatgattctaacgatgacattacctcttactcaaactctaccgcatcagcaactg 12896
Query: 587 attccacagatggccaatcctctgttagcattgaaactcaaactgtcaccgacaagtcta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12897 attccacagatggccaatcctctgttagcattgaaactcaaactgtcaccgacaagtcta 12956
Query: 647 gtaccacagctaccatcacttcatgttcagaaggggtctgtcacacacccactctagagc 706
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 12957 gtaccacagctaccatcacttcatgttcagaaggggtctgtcacacaaccactctagagc 13016
Query: 707 catctgcttttattggtgtcaccactgttgttgatggggttaccattgttaccaccgtcc 766
||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 13017 catctgcttctactgttgtcaccactgttgttgatggtgttaccattgttaccaccgtcc 13076
Query: 767 catgtacgaccacttctacccgtgaatgtaccgaggaacaatgcccaaagaccaaggaaa 826
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 13077 catgtacgaccacttctaccgttgaatgtaccgaggaacaatgccaaaagaccaaggaaa 13136
Query: 827 cagtttcc 834
||||||||
Sbjct: 13137 cagtttcc 13144
Score = 301 bits (152), Expect = 1e-81
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 217 tctaccactgaatacgaaactaagactctaactttgtccaagaacggtcactggttcact 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12200 tctaccactgaatacgaaactaagactctaactttgtccaagaacggtcactggttcact 12259
Query: 277 aagactgtcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggt 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12260 aagactgtcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggt 12319
Query: 337 gttgctccatgggctagtagttctgctgaaga 368
||||||||||||||||||||||||||||||||
Sbjct: 12320 gttgctccatgggctagtagttctgctgaaga 12351
Score = 238 bits (120), Expect = 2e-62
Identities = 132/136 (97%)
Strand = Plus / Plus
Query: 380 ctgaagaagcctctaccactcttgatgccgatgaacttgaaactgtcactttgactttgt 439
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12345 ctgaagaagcttctaccactcttgatgccgatgaacttgaaactgtcactttgactttgt 12404
Query: 440 ctaagaatggtcattggttcactaagaccgtcactcaaactaagggtttcgtatggaccg 499
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12405 ctaagaatggtcactggttcactaagaccgtcactcaaactaagggtttcgtctggaccg 12464
Query: 500 gcgaaccatctagatc 515
| ||||||||||||||
Sbjct: 12465 gtgaaccatctagatc 12480
>3x_Contig1493
Length = 12243
Score = 139 bits (70), Expect = 1e-32
Identities = 124/142 (87%)
Strand = Plus / Plus
Query: 211 gaagcctctaccactgaatacgaaactaagactctaactttgtccaagaacggtcactgg 270
||||| || ||||||||||||||||| ||| | |||||||| |||||||||||||||
Sbjct: 10892 gaagcttccaccactgaatacgaaaccgtcactttgactttgtctaagaacggtcactgg 10951
Query: 271 ttcactaagactgtcacccagccggttggtttcgtctggaccggtgaagcaactacctac 330
||||| ||||| |||||||| | || |||||||||||||| |||||||| || ||||||
Sbjct: 10952 ttcaccaagaccgtcacccaagcagtcggtttcgtctggactggtgaagctaccacctac 11011
Query: 331 actggtgttgctccatgggcta 352
||||||||||||||||||||||
Sbjct: 11012 actggtgttgctccatgggcta 11033
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4780
Number of Sequences: 1807
Number of extensions: 4780
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 2
length of query: 860
length of database: 10,358,551
effective HSP length: 16
effective length of query: 844
effective length of database: 10,329,639
effective search space: 8718215316
effective search space used: 8718215316
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)