BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA09FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1322 0.0
>3x_Contig1785
Length = 37935
Score = 1322 bits (667), Expect = 0.0
Identities = 737/759 (97%), Gaps = 1/759 (0%)
Strand = Plus / Minus
Query: 87 ttcaaggacagtatcgtatgtaatcaagtggtaacaagaatatagtaaagcgataaatcc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33342 ttcaaggacagtatcgtatgtaatcaagtggtaacaagaatatagtaaagcgataaatcc 33283
Query: 147 ttctttgttgtcggtttcaatgaagaatgataataggtcttcggcgatctgttgactttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33282 ttctttgttgtcggtttcaatgaagaatgataataggtcttcggcgatctgttgactttg 33223
Query: 207 tgaaattgcatttgtttcaatagcatgtttccagagctgttcgcccttgaagatagccaa 266
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33222 tgaaattgcagcagtttcaatagcatgtttccagagctgttcgcccttgaagatagccaa 33163
Query: 267 actcttggcccactttttgtttctacggtacaattcggcagcaataatcttgaagaaaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33162 actcttggcccactttttgtttctacggtacaattcggcagcaataatcttgaagaaaat 33103
Query: 327 tatctcatgattttccaaacgggtggccaactctagttgatcaaacttatcatacgagct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33102 tatctcatgattttccaaacgggtggccaactctagttgatcaaacttatcatacgagct 33043
Query: 387 aacagcgtcttgaagagctttgtaatcaacctcttcgatcatcaaatcgtgataagcctg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33042 aacagcgtcttgaagagctttgtaatcaacctcttcgatcatcaaatcgtgataagcctg 32983
Query: 447 attaactacggagttgttttttggcaagacattaattaagaatggtttaatcaatggtag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32982 attaactacggagttgttttttggcaagacattaattaagaatggtttaatcaatggtag 32923
Query: 507 attgtcagatttggagaaaattctaacagttcttggaatgtctaatcttggaatcaacac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32922 attgtcagatttggagaaaattctaacagttcttggaatgtctaatcttggaatcaacac 32863
Query: 567 ggttaataaatcaacaagtagtgaagggtgttccttcacataaaagttgattgctttgta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32862 ggttaataaatcaacaagtagtgaagggtgttccttcacataaaagttgattgctttgta 32803
Query: 627 gtaaaattccaagtttgacacttttacaatgatttcttttgagtacgaatgttcaaagtt 686
||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||||
Sbjct: 32802 gtaaatttccaagtttgacactttaacaatgatttctttgaagtacgaatggtcaaagtt 32743
Query: 687 ataggcagacttttcaatcatcgttaaagcagcattatcccattcatcgtaatgggcata 746
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 32742 ataggcagacttttcaatcatcgttaaagcagcattatcccattcatcgtagtgtgcata 32683
Query: 747 caaaaagatcaatttctggccctaaatgaacattctctacaagccttatgactttttgaa 806
|||||||||||| |||||||| ||||||| ||| ||||||| ||||||||||||| |||
Sbjct: 32682 caaaaagatcaa-ttctggccataaatgagcatcctctacagcccttatgacttttggaa 32624
Query: 807 tgttaataccagaaccaaatagctttaggggttcataag 845
||||||||| ||| | |||||||||||| |||||||||
Sbjct: 32623 tgttaatacgagaccagaatagctttaggtgttcataag 32585
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7223
Number of Sequences: 1807
Number of extensions: 7223
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)