BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA09RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1751 1495 0.0
>3x_Contig1751
Length = 24682
Score = 1495 bits (754), Expect = 0.0
Identities = 843/866 (97%), Gaps = 5/866 (0%)
Strand = Plus / Plus
Query: 49 tgaaatctgtgtccttttat-atactgtttctttctcgttacgcgctgttgactgtgcaa 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2250 tgaaatctgtgtccttttatcatactgtttctttctcgttacgcgctgttgactgtgcaa 2309
Query: 108 agtgtcaaaatacgaaggtggccatccatcgaaaattgtaaatatacgaagtttcgttca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2310 agtgtcaaaatacgaaggtggccatccatcgaaaattgtaaatatacgaagtttcgttca 2369
Query: 168 gatattaaacatacatgagacgagatgaagacagaaaagaatttaagagctcgtaactgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2370 gatattaaacatacatgagacgagatgaagacagaaaagaatttaagagctcgtaactgg 2429
Query: 228 cccaagtacagtcattagctacactgtatttgtaattactgacatctaaaaggcttacaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2430 cccaagtacagtcattagctacactgtatttgtaattactgacatctaaaaggcttacaa 2489
Query: 288 agtctgtgcttttacttgcgttcccacaaaggaagttctgaaattatagtatgactgtga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 agtctgtgcttttacttgcgttcccacaaaggaagttctgaaattatagtatgactgtga 2549
Query: 348 catctgctgttccaactccatttatcgtttctgctcccggtaaggtgattatattcggcg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 catctgctgttccaactccatttatcgtttctgctcccggtaaggtgattatattcggcg 2609
Query: 408 aacattcagccgtgttcaataagaatgctatagctgctagtgtatcttctctaaggacgt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 aacattcagccgtgttcaataagaatgctatagctgctagtgtatcttctctaaggacgt 2669
Query: 468 atttactgatcgaacaatctaaggatggcgatggggtagagctagacttcccagatatca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 atttactgatcgaacaatctaaggatggcgatggggtagagctagacttcccagatatca 2729
Query: 528 attatgattcaaaatggagcacggaagaattgaaaacaatcgacagcgaagttgtaaaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 attatgattcaaaatggagcacggaagaattgaaaacaatcgacagcgaagttgtaaaac 2789
Query: 588 aagctgctggcctgaaacatttatgtccaaagcttaaagagcagttgaatttacttttgg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2790 aagctgctggcctgaaacatttatgtccaaagcttaaagagcagttgaatttacttttgg 2849
Query: 648 aaggtttgaaggattctttgaactactatgctgcattgtcattcctatacttgtacctaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 aaggtttgaaggattctttgaactactatgctgcattgtcattcctatacttgtacctaa 2909
Query: 708 agttgtgtcccaatgtggaaggcttaaaa-tcacggtgaaatcaactttaccgattggag 766
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2910 gtttgtgtcccaatgtgaaaggcttaaaattcacggtgaaatcaactttaccgattggag 2969
Query: 767 cttgacttggatctagtgcgtcaatttctgtaggtcttgctcttgcaatggc-agaatgg 825
|| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 2970 ctggacttggatctagtgcgtcaatttctgtatgtcttgctcttgcaatggcaagaatgg 3029
Query: 826 ggcgtcattttttatgtgataaaagtattttcc-agaagaggaagaagttatcaatcatt 884
| ||||| | | ||||||||||||||| | || ||| ||| |||| ||||||||||||
Sbjct: 3030 gcggtcatatctcatgtgataaaagtatctcccaagaggagaaagagtttatcaatcatt 3089
Query: 885 ggggctttcatcggggaaagttgtat 910
||||||||||||| ||| |||||||
Sbjct: 3090 -gggctttcatcggtgaatgttgtat 3114
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6594
Number of Sequences: 1807
Number of extensions: 6594
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)