BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA11FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1078 1181 0.0
3x_Contig815 335 9e-92
>3x_Contig1078
Length = 3134
Score = 1181 bits (596), Expect = 0.0
Identities = 596/596 (100%)
Strand = Plus / Minus
Query: 87 aacaaaaaattcgtcatgagacaaaggtttctttatgaaatctggcgtttccttaagccc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aacaaaaaattcgtcatgagacaaaggtttctttatgaaatctggcgtttccttaagccc 603
Query: 147 actagcggttccatctttgtctgacataatgggaagttacctgtatattctggtgacttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 actagcggttccatctttgtctgacataatgggaagttacctgtatattctggtgacttg 543
Query: 207 gataagtgatgatattgaacctttttctttggacatctttaccatattctgcctgtcgaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gataagtgatgatattgaacctttttctttggacatctttaccatattctgcctgtcgaa 483
Query: 267 ggttgaatctaaggcctttccctcatttgactggagctaagtacgattttttcaactggc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggttgaatctaaggcctttccctcatttgactggagctaagtacgattttttcaactggc 423
Query: 327 aattacactacccggccatcgtcccttcactatgtgtttcctctttatttctacgacgtt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aattacactacccggccatcgtcccttcactatgtgtttcctctttatttctacgacgtt 363
Query: 387 tctgatatccactctgtttctataccggtaaacaagtgcaaaaagaatgaaatgtggcaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tctgatatccactctgtttctataccggtaaacaagtgcaaaaagaatgaaatgtggcaa 303
Query: 447 accacgtgacgttcttcattacccggataacatttaacatctgcgccagatttgccaaat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 accacgtgacgttcttcattacccggataacatttaacatctgcgccagatttgccaaat 243
Query: 507 caattgtgcctattcacctgaacccgaaaagaaattcgttagtttttttagaaaaagaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 caattgtgcctattcacctgaacccgaaaagaaattcgttagtttttttagaaaaagaaa 183
Query: 567 tttccgatcctcgatcttgtttttcccaacaaaaaaaaaaaagaaaaacaacaggtcccc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tttccgatcctcgatcttgtttttcccaacaaaaaaaaaaaagaaaaacaacaggtcccc 123
Query: 627 atactatatgagatgagacgagatgagatgagatgcgatgagttacagagaaacag 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atactatatgagatgagacgagatgagatgagatgcgatgagttacagagaaacag 67
Score = 129 bits (65), Expect = 1e-29
Identities = 72/73 (98%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 692 agtcattgtcactttgcactaaagagaagcgtgtgtaagcttctctgtcatcaaggagat 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcattgtcactttgcactaaagagaagcgtgtgtaagcttctctgtcatcaaggagat 60
Query: 752 tacnggactgttt 764
||| |||||||||
Sbjct: 61 tac-ggactgttt 72
>3x_Contig815
Length = 3073
Score = 335 bits (169), Expect = 9e-92
Identities = 222/237 (93%), Gaps = 2/237 (0%)
Strand = Plus / Minus
Query: 681 agaaagggggtagtcattgtcactttgcactaaag-agaagcgtgtgtaagcttctctgt 739
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 3073 agaaagggggtagtcattgtcactttgcactaaagcagaagcgtgtgtaagcttctctgt 3014
Query: 740 catcaaggagattacnggactgttttttgaggtatcctattggatatgtaaagtgatcgc 799
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3013 catcaaggagattac-ggactgttttttgaggtatcctattggatatgtaagttgatcgc 2955
Query: 800 gtgatttgctacagagttttgttggcaatgttacaccttcaatcgatcaactgtacattc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 gtgatttgctacagagttttgttggcaatgttacaccttcaatcgatcaactgtacattc 2895
Query: 860 ctttacccttgatgagagaatccggagtatcccatgtttttgtaaaaactcaattgt 916
| ||||||||||||||| | ||||||||| |||| ||||| || |||||||||
Sbjct: 2894 tctcacccttgatgagagatccgggagtatccagtgttattgtagaagctcaattgt 2838
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,530
Number of Sequences: 1807
Number of extensions: 14530
Number of successful extensions: 757
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)