BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA11RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1736 1554 0.0
>3x_Contig1736
Length = 21222
Score = 1554 bits (784), Expect = 0.0
Identities = 836/853 (98%), Gaps = 2/853 (0%)
Strand = Plus / Minus
Query: 50 tttcattcttgaaatggtcgatttcaccacagaatagaacggataatgttggtaagattt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17981 tttcattcttgaaatggtcgatttcaccacagaatagaacggataatgttggtaagattt 17922
Query: 110 ttctttccaagaaacagccgaccttaccgtttgaatcaatggaaccacggaacacagatt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17921 ttctttccaagaaacagccgaccttaccgtttgaatcaatggaaccacggaacacagatt 17862
Query: 170 gtctgtattcgtacttacaacctaaagtggtagcaccttcaatggctggttggaacccaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17861 gtctgtattcgtacttacaacctaaagtggtagcaccttcaatggctggttggaacccaa 17802
Query: 230 taggttggccgataactgggtccatgattggcaacatggaggcttgtagagaagtttcta 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17801 taggttggccgataactgggtccatgattggcaacatggaggcttgtagagaagtttcta 17742
Query: 290 gaccagcttccatgtttggagacacctttctccagaaagaggcgacagcagcaccattag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17741 gaccagcttccatgtttggagacacctttctccagaaagaggcgacagcagcaccattag 17682
Query: 350 cttgcaattgaccggagaagatccagtcctgcttagcagaaacgaaacgtgtcatatagg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17681 cttgcaattgaccggagaagatccagtcctgcttagcagaaacgaaacgtgtcatatagg 17622
Query: 410 acacagcggcgtcagctggggacatagcttgacccttagaataaatagcttccaaaccaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17621 acacagcggcgtcagctggggacatagcttgacccttagaataaatagcttccaaaccaa 17562
Query: 470 tagccaattggggagtaatggactgtagaatagaaccaacagcaacaccagtgaagctac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17561 tagccaattggggagtaatggactgtagaatagaaccaacagcaacaccagtgaagctac 17502
Query: 530 cgtcacttgcagcagaaggattcaaagtcttgaaattcaaagagaaatcagaagcctggt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17501 cgtcacttgcagcagaaggattcaaagtcttgaaattcaaagagaaatcagaagcctggt 17442
Query: 590 aatcttgttccaattggcacattgttggctgaccttcagagatttgtaacgtgaccttgg 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17441 aatcttgttccaattggcacattgttggctgaccttcagagatttgtaacgtgaccttgg 17382
Query: 650 tgacattgttcttatcccaaccgtattgcagtctaccggacaaagacatttggttatcaa 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17381 tgacattgttcttatcccaaccgtattgcagtctaccggacaaagacatttggttatcaa 17322
Query: 710 cattaccttgcatgaacaagttatcgttagcaaacaaagcactgaaggcatagtttggca 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17321 cattaccttgcatgaacaagttatcgttagcaaacaaagcactgaaggcatagtttggca 17262
Query: 770 nagattcagagcccatggagaaagtatgagaagttttggaaaagctggttgaanggcaaa 829
|||||||||||||||||||||||||||||| |||| | |||||||| | | ||||||
Sbjct: 17261 aagattcagagcccatggagaaagtatgagaggttt--ggaaagctgggttgaaggcaaa 17204
Query: 830 gttcttgttcaaaatcgctctcaaaccggtgaaagaatattgtgtcaaggaaacatcacg 889
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 17203 agtcttgttcaaatcggctctcaaaccggtgaagaaatattgtgtcaagaaaacatcacg 17144
Query: 890 agaaacttctttg 902
|||||||||||||
Sbjct: 17143 agaaacttctttg 17131
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6626
Number of Sequences: 1807
Number of extensions: 6626
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)