BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZA12FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 1360 0.0
>3x_Contig1612
Length = 15608
Score = 1360 bits (686), Expect = 0.0
Identities = 747/762 (98%), Gaps = 4/762 (0%)
Strand = Plus / Plus
Query: 86 tggacaagagagttgctgaactattgggattctctactgtctacccagttaccggtcaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13726 tggacaagagagttgctgaactattgggattctctactgtctacccagttaccggtcaaa 13785
Query: 146 cttattctagaaagattgatatcgacgtgttggctccattatcctcatttgcagctactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13786 cttattctagaaagattgatatcgacgtgttggctccattatcctcatttgcagctactg 13845
Query: 206 ctcacaagatggcgactgatatcagattattggctaacttgaaggaattggaagaaccgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13846 ctcacaagatggcgactgatatcagattattggctaacttgaaggaattggaagaaccgt 13905
Query: 266 tcgaaaaatctcaaattggttcctctgccatggcttacaagagaaacccaatgcgttgcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13906 tcgaaaaatctcaaattggttcctctgccatggcttacaagagaaacccaatgcgttgcg 13965
Query: 326 aacgtgtgtgttctcttgccagacatttgggttctttgttcaacgatgccgtacaaaccg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13966 aacgtgtgtgttctcttgccagacatttgggttctttgttcaacgatgccgtacaaaccg 14025
Query: 386 cgtcagtgcaatggtttgaaagaactttggatgactctgccatcagaagaatctctttgc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14026 cgtcagtgcaatggtttgaaagaactttggatgactctgccatcagaagaatctctttgc 14085
Query: 446 caagtgctttcttgaccgcagacattctactatccactttgctaaacatctcttccggtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14086 caagtgctttcttgaccgcagacattctactatccactttgctaaacatctcttccggtt 14145
Query: 506 tagtcgtttatccaaaggtcatcgaaagaagaattatgggtgaattgccattcatggcca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14146 tagtcgtttatccaaaggtcatcgaaagaagaattatgggtgaattgccattcatggcca 14205
Query: 566 ctgaaaatattatcatggccatggtcgagcacggtgcattccagac-agaagttcatgaa 624
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 14206 ctgaaaatattatcatggccatggtcgagcacggtgca-tccagacaagaagttcatgaa 14264
Query: 625 gctatcagagtgctatctcaccaagctgccgctgtcgtcaagg-acaaggtggtgacaac 683
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14265 gctatcagagtgctatctcaccaagctgccgctgtcgtcaaggaacaaggtggtgacaac 14324
Query: 684 gacttgatcgaacgtgtgagacaggacaagttctttcgacctatctggaatgaatt-gac 742
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 14325 gacttgatcgaacgtgtgagacaggacaagttcttcgaacctatctggaatgaattggac 14384
Query: 743 tcattgtttgagccatccacctttgtcgggagagcttctcaacaagttgagaagttcgtt 802
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 14385 tcattgttggagccatccacctttgtcggtagagctcctcaacaagttgagaagttcgtt 14444
Query: 803 gccaaccatgtaaaccaagcgttggctgcctttcaaaatgat 844
|||||| |||| || |||||||||||||| || |||||||||
Sbjct: 14445 gccaacgatgtcaaacaagcgttggctgctttccaaaatgat 14486
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6371
Number of Sequences: 1807
Number of extensions: 6371
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)