BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB01FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig907 535 e-152
3x_Contig1195 408 e-114
>3x_Contig907
Length = 3418
Score = 535 bits (270), Expect = e-152
Identities = 309/318 (97%), Gaps = 3/318 (0%)
Strand = Plus / Plus
Query: 90 atgttgatgattctgtgcaactgactcaattatattcacaaaggtaccagaaagcgaaaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3095 atgttgatgattctgtgcaactgactcaattatattcacaaaggtaccagacagcgaaaa 3154
Query: 150 attagcataatcagtgacaaagtgctgttcatttatggattttgcacactggtagaactc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3155 attagcataatcagtgacaaagtgctgttcatttatggattttgcacactggtagaactc 3214
Query: 210 accatagaagtagttgaaagtagctaagtcaactttattcacaaaaaataaacccatcaa 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3215 accatagaagtagttgaaagtagctaagtcaactttattcacaaaaaataaacccatcaa 3274
Query: 270 tattttgtggaaacatacaagccttttagggtcatcgaatgggaaatgaactgcagctag 329
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3275 tattttgtgg-aacatacaagccttttagggtcatcgaatgggaaatgaactgaagctag 3333
Query: 330 catgtaatgacggatcatataagtggaaaaaactgtttgcggtattatcacagtagtctt 389
|||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 3334 aatgtaatgacggataatataaaaggaaaaaa-tgtttgcggtattatcacagtagtctt 3392
Query: 390 aacatcatgtgcgtgctc 407
|||||||||||||||||
Sbjct: 3393 -acatcatgtgcgtgctc 3409
>3x_Contig1195
Length = 5875
Score = 408 bits (206), Expect = e-114
Identities = 258/272 (94%), Gaps = 3/272 (1%)
Strand = Plus / Plus
Query: 525 gcttgaattttccaatattgtgtataatatgcctttgaacatgtncaaacgattcaccct 584
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3 gcttgaattttccaatattgtgtataatatgcctttgaacatgtccaaacgattcaccct 62
Query: 585 aaccgaattggaagacacgtattttacccttttccccttgattaaaatctaaatncaaac 644
|||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 63 aaccgaattgaaggacacgtattttacccttttccc-ttgattaaaatctaaattcaaac 121
Query: 645 attttgccagataaagtgaagtttgtcgaattatccatgttattcgagacgaggaaaggt 704
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 122 attttgccagataaagtgaagtttgtcgaattatccatgttatccgagacgaggaaaggt 181
Query: 705 ctgatcgcttctcactgtgacgcttatttttagagactgaaaagaactggagaaatccaa 764
|||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct: 182 ctgatcgcttctcactgtgacgcttatttttagagactgaaatgaactgtag-aatccag 240
Query: 765 cgggaaagagaaaaaacgggtcccattttctt 796
| |||||||||||||| |||||||| |||||
Sbjct: 241 c-ggaaagagaaaaaagcggtcccatattctt 271
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6805
Number of Sequences: 1807
Number of extensions: 6805
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)