BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB01RM1.SCF screened BAC_end
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1507 0.0
>3x_Contig1502
Length = 14970
Score = 1507 bits (760), Expect = 0.0
Identities = 814/827 (98%), Gaps = 4/827 (0%)
Strand = Plus / Minus
Query: 47 gaatcaaa-gcttctgaacttgttcttcagtaacaaatgaatataggaattctttcagga 105
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043 gaatcaaatgcttctgaacttgttcttcagtaacaaatgaatataggaattctttcagga 5984
Query: 106 aaagttccaaacagaatgctgaaggcaactctttggcgaggataacttctttaccgagat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5983 aaagttccaaacagaatgctgaaggcaactctttggcgaggataacttctttaccgagat 5924
Query: 166 actctactaatctttcagtcaactgttccagcgaatgcaaaggaattggtttcttggctt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5923 actctactaatctttcagtcaactgttccagcgaatgcaaaggaattggtttcttggctt 5864
Query: 226 ggcactgtaatacagaatgaactagggatcccagagtgataactacaccagtatttggaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5863 ggcactgtaatacagaatgaactagggatcccagagtgataactacaccagtatttggaa 5804
Query: 286 gcttcaatttcgagtagttgtctaataacaatggaataacatcatcaacaatattagatt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5803 gcttcaatttcgagtagttgtctaataacaatggaataacatcatcaacaatattagatt 5744
Query: 346 ttgaatctgtagtagattccaggttcacacaactaacgaaactcttaacagattgttgga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5743 ttgaatctgtagtagattccaggttcacacaactaacgaaactcttaacagattgttgga 5684
Query: 406 agacacagagcctcaatctcttacgatgttggttttgcttattcaaatctttcttaaaag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5683 agacacagagcctcaatctcttacgatgttggttttgcttattcaaatctttcttaaaag 5624
Query: 466 gttcatgggtatctaggatagtctcgatagctgctacaagcatcacataagcgtggacta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5623 gttcatgggtatctaggatagtctcgatagctgctacaagcatcacataagcgtggacta 5564
Query: 526 tttctttccaataaacattgaagagctcatctgattgttcataaatcaaattcaaaaatt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5563 tttctttccaataaacattgaagagctcatctgattgttcataaatcaaattcaaaaatt 5504
Query: 586 taagcacccattccaataaatttaaataatcagtaacagctttagaagggcagttttgag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5503 taagcacccattccaataaatttaaataatcagtaacagctttagaagggcagttttgag 5444
Query: 646 tgctggcagtcttgataacaaaatcacttatctttttacaatagatggggtccgtttcaa 705
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5443 tgctggcagtcttgataacaaaatcacttatctttttacaatagatggggtcggtttcaa 5384
Query: 706 acaattggaccangattgaagtgactagaacttttgattctttatcctgatat-aatcat 764
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 5383 acaattggaccaggattgaagtgactagaacttttgattctttatcctgatataaatcat 5324
Query: 765 aagtgcttagtacgcaattgaaaataaatttcaacgcccagctatcagttttacttttat 824
||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct: 5323 aagtgcttagtacgcaattgaaaatcaattccaacgccgagctatcagttttacttttat 5264
Query: 825 cggtgggattttaacagttctaggggccttttttaataccggtagcc 871
| || ||||||||||||||||| |||| || |||||||||||||||
Sbjct: 5263 c-gttggattttaacagttcta-gggcacttcttaataccggtagcc 5219
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7446
Number of Sequences: 1807
Number of extensions: 7446
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)