BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB02FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig628 1154 0.0
>3x_Contig628
Length = 1864
Score = 1154 bits (582), Expect = 0.0
Identities = 713/747 (95%), Gaps = 9/747 (1%)
Strand = Plus / Plus
Query: 179 gtttatatattgatccacatttctagtaccactaccaccaccggtcttagaatttctcag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttatatattgatccacatttctagtaccactaccaccaccggtcttagaatttctcag 60
Query: 239 gttcaatgatagcttcttctccagttgttcttgcaaatcagctagctcgtcctgatccga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttcaatgatagcttcttctccagttgttcttgcaaatcagctagctcgtcctgatccga 120
Query: 299 actttccctaaatcgtctatccacagcaagaggtaggtctgtaccattttggtactcttc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actttccctaaatcgtctatccacagcaagaggtaggtctgtaccattttggtactcttc 180
Query: 359 aaaatcactgttatagttcatatcatcatcaagatcgctcgccagttccgtgtgtgatga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaatcactgttatagttcatatcatcatcaagatcgctcgccagttccgtgtgtgatga 240
Query: 419 atacctcttatccttagagaatgtggtattttccgtagttgtggatgtagctgaattagg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atacctcttatccttagagaatgtggtattttccgtagttgtggatgtagctgaattagg 300
Query: 479 tgccaatctcggtacctctatatcatctttataagtaaatgtgctttcaacatcttcaaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgccaatctcggtacctctatatcatctttataagtaaatgtgctttcaacatcttcaaa 360
Query: 539 tgatgtttctccgacatcatccagtacaactggacgtatagacatcgataatcgaagatt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgatgtttctccgacatcatccagtacaactggacgtatagacatcgataatcgaagatt 420
Query: 599 gtccctggtcttttcccttgnntattcctttggttacatctcgaacatacctttaatgct 658
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 421 gtccctggtcttttcccttgtttattcctttgtttacatctcgaacatacctttaatgct 480
Query: 659 ttcgtcaatgatgtatctattaacccttaacaaaaaaatcatattcgtgagacgtgatac 718
| ||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 481 tccgtcattgatgtatctattaaccttaaacaaaataatcatattcgtgagacgtgatac 540
Query: 719 tatattaattgctgtttaaaccgctgttgagacgccaattttgatattcgagcactctta 778
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 541 tatattaattgctgtttaaaccgctgttgagacgccaattctgcatttcgagcactccta 600
Query: 779 t-aaacactgagaattcccaaaattcgactatagttataaattacctttttaaacactta 837
| |||||||||| ||||||| |||||||||| ||||| ||||||| ||||||||||| |
Sbjct: 601 taaaacactgag-attcccagaattcgacta-agttaataattacc-ttttaaacactca 657
Query: 838 tttaaggcgccggttatctccgggtgggttttcctttaaggccttccaaaatgattcaaa 897
||| ||||| || ||||||| || ||||| |||| | | ||||||||||||||||||
Sbjct: 658 ttt-aggcg-cgtttatctc--tgtttgtttttctttcatg-cttccaaaatgattcaaa 712
Query: 898 attgcaaaaaaccgtattattgtaatt 924
|||||||| ||||||||||||||||||
Sbjct: 713 attgcaaagaaccgtattattgtaatt 739
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5962
Number of Sequences: 1807
Number of extensions: 5962
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)