BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB02RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1462 1499 0.0
>3x_Contig1462
Length = 8247
Score = 1499 bits (756), Expect = 0.0
Identities = 838/855 (98%), Gaps = 8/855 (0%)
Strand = Plus / Plus
Query: 49 tggttttgaagttccacggcagttaatccagcttcgtgtttgtgattatataaaggtacg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4903 tggttttgaagttccacggcagttaatccagcttcgtgtttgtgattatataaaggtacg 4962
Query: 109 ggttggacaggtccttttgttggtctagtgaaggcagggtgtgactttcttgtgccaata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4963 ggttggacaggtccttttgttggtctagtgaaggcagggtgtgactttcttgtgccaata 5022
Query: 169 atcggttctactttggtaatcctctttccttttttgcctgggtctaacatagaaatcatc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 atcggttctactttggtaatcctctttccttttttgcctgggtctaacatagaaatcatc 5082
Query: 229 attttaattgattcggtgttttcgagtctagtattgattgtttaatcatggatgattcta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5083 attttaattgattcggtgttttcgagtctagtattgattgtttaatcatggatgattcta 5142
Query: 289 tgcttcagaaacgcgtggaaggtctggagagacagatctcgatgtatgaacggttattcc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5143 tgcttcagaaacgcgtggaaggtctggagagacagatctcgatgtatgaacggttattcc 5202
Query: 349 aatcgtttagttcgaagttagatcatcatttcaagaaatacgatgtattggtatcgtcac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 aatcgtttagttcgaagttagatcatcatttcaagaaatacgatgtattggtatcgtcac 5262
Query: 409 agcagcagcagataaacatccttacagaggcgctttcgacaatgctgaatgatcagtatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 agcagcagcagataaacatccttacagaggcgctttcgacaatgctgaatgatcagtatc 5322
Query: 469 gatatagtgagattctgagggacaagttggggacggcgttgagttccgtcagtgcgactc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 gatatagtgagattctgagggacaagttggggacggcgttgagttccgtcagtgcgactc 5382
Query: 529 atgttaatatagcggggctcagtaaccagagaatgcaagataaccagaagcagcagcagc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 atgttaatatagcggggctcagtaaccagagaatgcaagataaccagaagcagcagcagc 5442
Query: 589 agcagcagcagcagcagcaacaacaaccacccacaac-acaacaacaacaaccacaacca 647
|||||||||||||||||||||||||| || | ||||| |||||||||||||| ||||| |
Sbjct: 5443 agcagcagcagcagcagcaacaacaa-caacaacaacaacaacaacaacaacaacaacaa 5501
Query: 648 caacaacaacagcagcagcagcagcagcagcagcagcagcagacccaaccgttgtcngac 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5502 caacaacaacagcagcagcagcagcagcagcagcagcagcagacccaaccgttgtcgaac 5561
Query: 708 gttacagcgtttttggaagattttatagcaccggatgttccgttgtctaatgcggtacct 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5562 gttacagcgtttttggaagattttatagcaccggatgttccgttgtctaatgcggtacct 5621
Query: 768 agacgtgcaaagctgggggtctttccaaacaaaacaaactacagcgctttacccctacac 827
|||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 5622 agacgtgcaaagct-ggggtctttccaaacaaaacaaactacagcgc-ttaaccctacac 5679
Query: 828 cagatcaagataccaggtttccggccttttgaaggtggacgttccctgtaccatctggcg 887
|||||||||||| |||| |||||||| |||| ||||||||||| ||||||||||||||||
Sbjct: 5680 cagatcaagata-cagggttccggcc-tttggaggtggacgtt-cctgtaccatctggcg 5736
Query: 888 tggcccgtagaagat 902
||| |||||||||||
Sbjct: 5737 tgg-ccgtagaagat 5750
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,437
Number of Sequences: 1807
Number of extensions: 10437
Number of successful extensions: 1685
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)