BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZB03FM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1791                                                        1245   0.0  

>3x_Contig1791 
          Length = 39945

 Score = 1245 bits (628), Expect = 0.0
 Identities = 705/725 (97%), Gaps = 5/725 (0%)
 Strand = Plus / Plus

                                                                         
Query: 86    tatttggtctggaaccaaatccaagtgaatataatcgatacgaagccaattccatcgaag 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20135 tatttggtctggaaccaaatccaagtgaatataatcgatacgaagccaattccatcgaag 20194

                                                                         
Query: 146   agagtttcttatttaaccaataatcaaaaagttttggccaagcttcgatctcggaaatag 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20195 agagtttcttatttaaccaataatcaaaaagttttggccaagcttcgatctcggaaatag 20254

                                                                         
Query: 206   attgagcgatggttcaatgtttttaccgactaaaactttaaaagtatcattctcagaatg 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20255 attgagcgatggttcaatgtttttaccgactaaaactttaaaagtatcattctcagaatg 20314

                                                                         
Query: 266   ccataaattggaaacgatggaaattaagaattcatgcatgtaaatatacaacactgtatc 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20315 ccataaattggaaacgatggaaattaagaattcatgcatgtaaatatacaacactgtatc 20374

                                                                         
Query: 326   agcgtatgaacagtaaaataacaaattatagttccttaagatagaaatcgatatcctata 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20375 agcgtatgaacagtaaaataacaaattatagttccttaagatagaaatcgatatcctata 20434

                                                                         
Query: 386   ctcctttgccggtatccgccgtctttttgttatataacctgtccgtcttattgctaccca 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20435 ctcctttgccggtatccgccgtctttttgttatataacctgtccgtcttattgctaccca 20494

                                                                         
Query: 446   cattcaaaattctgggacagccatctcggcttcgttcagatctgtggcagtcccaacaat 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20495 cattcaaaattctgggacagccatctcggcttcgttcagatctgtggcagtcccaacaat 20554

                                                                         
Query: 506   ataacgcttcatgcgttccaggactttcgc-aattatacacctgcttccactacttccag 564
             |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 20555 ataacgcttcatgcgttccaggacttccgcaaattatacacctgcttccactacttccag 20614

                                                                         
Query: 565   aggagcaagagtcgcatatccgtaccttag-aattagccttacatctgaatcacataagg 623
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 20615 aggagcaagagtcgcatatccgtaccttagaaattagccttacatctgaatcacataagg 20674

                                                                         
Query: 624   gacatcttncatcacatttatcacaaaaccttccctacangagtttcaagaagtttcatg 683
             |||||||| |||||||| |||||| ||||||||||||||   ||| || |||||||||||
Sbjct: 20675 gacatcttccatcacatctatcac-aaaccttccctacagaggttccaggaagtttcatg 20733

                                                                         
Query: 684   cacataaccaagtcgtactgatggcgagacatcttaattcagtgatattaatagtaattt 743
             |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
Sbjct: 20734 cacataaccaagtcgtactgatggcgagacatcttaatccagtgataataatagtaatat 20793

                                                                         
Query: 744   aaatggattaat-agacctgacggggtattggggaaaaacccttagttttctgtnctttg 802
             |||| ||||||| ||||||||||| ||| ||||||||||| ||||||||||||| |||||
Sbjct: 20794 aaatagattaataagacctgacggtgta-tggggaaaaacacttagttttctgttctttg 20852

                  
Query: 803   tttta 807
             |||||
Sbjct: 20853 tttta 20857


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5535
Number of Sequences: 1807
Number of extensions: 5535
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)