BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB03RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1246 1475 0.0
>3x_Contig1246
Length = 5473
Score = 1475 bits (744), Expect = 0.0
Identities = 836/861 (97%), Gaps = 7/861 (0%)
Strand = Plus / Plus
Query: 52 ataaagggcctatgataatctcacaagctcctatatccggtttgaattttgtttaaagac 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4606 ataaagggcctatgataatctcacaagctcctatatccggtttgaattttgtttaaagac 4665
Query: 112 cgtgactagtacagttcggagttgcaggagaaatgacccgtcacacaagttaaaacctta 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4666 cgtgactagtacagttcggagttgcaggagaaatgacccgtcacacaagttaaaacctta 4725
Query: 172 aaatttggaaacggtaaattgtacttttgctaagtgtacaattgtttgtacaatattcag 231
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4726 aaatttggaaacggtaaattgtacttttgctaagtgtacaattgtttgcacaatattcag 4785
Query: 232 aaggataagcagagcatgctacatatttaatttataactactataatccttctatatgct 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4786 aaggataagcagagcatgctacatatttaatttataactactataatccttctatatgct 4845
Query: 292 aaaaagaccatcgaaacttagcctgccagaaatgtgcaactcccgtaaggttttaagcct 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4846 aaaaagaccatcgaaacttagcctgccagaaatgtgcaactcccgtaaggttttaagcct 4905
Query: 352 atgtggaggttgtgaacgacatcatttcttcctaaattagtcattatacaagcgtcatct 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4906 atgtggaggttgtgaacgacatcatttcttcctaaattagtcattatacaagcgtcatct 4965
Query: 412 cattatctcatatatcgaaaagtcttttataccacgtgatatcaatgttaatttcgacaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4966 cattatctcatatatcgaaaagtcttttataccacgtgatatcaatgttaatttcgacaa 5025
Query: 472 catgaattggcgctacaatacgaagcgaaatttgaggatgaggtgaaacataacatcaag 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5026 catgaattggcgctacaatacgaagcgaaatttgaggatgaggtgaaacataacatcaag 5085
Query: 532 aactttcagttattggccatagtaagatagtgtttcgcttgaccttctcaaccaatggga 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5086 aactttcagttattggccatagtaagatagtgtttcgcttgaccttctcaaccaatggga 5145
Query: 592 atccaaatcgattntgtacaaagactangattntgcaacanattgaaacgatttactttc 651
||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||| |
Sbjct: 5146 atccaaatcgattttgtacaaagactaggattttgcaacaaattgaaacgatttacttcc 5205
Query: 652 tcttagtcatggagcataaacagattttctcactgccaagtaattctgtttcgttattat 711
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5206 tcttagtcatggagcataaacagatttcctcactgccaagtaattctgtttcgttattat 5265
Query: 712 tgaatccagctcanacgacca-tatcgtacgccaatgacgaaagaaaacacgttatagat 770
||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 5266 tgaatccagctcaaacgaccattatcgtacgccaatgacgaaagaaaacacgtaatagat 5325
Query: 771 tagggagaaacctncagtcattctaccacttctaaaaat-aggttactaccaattcagtc 829
|||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 5326 aagggagaaacctccagtcattctaccacttctaaaaataagtttactaccaattcagtc 5385
Query: 830 gca-aagcgctgataccg-aaattccagtgccggacc-gtttgaaaacaa--catttcaa 884
||| |||||||||||||| |||| |||||||| |||| |||||||||||| |||| |||
Sbjct: 5386 gcagaagcgctgataccgaaaatcccagtgcccgaccagtttgaaaacaacgcattccaa 5445
Query: 885 gacgactttttccaggaaagt 905
||||||| || | ||||||||
Sbjct: 5446 gacgactcttccgaggaaagt 5466
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5854
Number of Sequences: 1807
Number of extensions: 5854
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)