BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB04FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1168 0.0
>3x_Contig1604
Length = 15703
Score = 1168 bits (589), Expect = 0.0
Identities = 634/645 (98%), Gaps = 3/645 (0%)
Strand = Plus / Plus
Query: 86 gttaaggatgtgaatgaggatgatctatatgatacccactggctgcttggatctgtggaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11134 gttaaggatgtgaatgaggatgatctatatgatacccactggctgcttggatctgtggaa 11193
Query: 146 catggagaattgttatcttcagacactccatctattcctaaggaatggagtgacaaaatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11194 catggagaattgttatcttcagacactccatctattcctaaggaatggagtgacaaaatt 11253
Query: 206 agtgaaatcttgcaaacaaaatcctcatcatatcaagatatgtcaaatacctggacactt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11254 agtgaaatcttgcaaacaaaatcctcatcatatcaagatatgtcaaatacctggacactt 11313
Query: 266 gaattaaagtcatgtccacacatacagactttcgacttatcgaacttggagaagcgagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11314 gaattaaagtcatgtccacacatacagactttcgacttatcgaacttggagaagcgagaa 11373
Query: 326 ggtggcatttctcaaagctgtaacgactgtggtcttacttctaacctttggttatgtctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11374 ggtggcatttctcaaagctgtaacgactgtggtcttacttctaacctttggttatgtctc 11433
Query: 386 cattgtggaaacgtcgcctgtggaagagagcaggttgggatagaggggtactctcatgct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11434 cattgtggaaacgtcgcctgtggaagagagcaggttgggatagaggggtactctcatgct 11493
Query: 446 ttgaaacattatgaaagcacagatggccacgctttagcgataaaattgggctctttgaca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11494 ttgaaacattatgaaagcacagatggccacgctttagcgataaaattgggctctttgaca 11553
Query: 506 gctgatgcagctgatatatactgttattcttgtgatgaagatgtgaaattcacccataat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11554 gctgatgcagctgatatatactgttattcttgtgatgaagatgtgaaattcacccataat 11613
Query: 566 ctgcagttgcaggatatcttgaagtttttggaagtcgaagtaccagccaagtccaaaaga 625
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 11614 ctgcagttgcaggatatcttgaagttttgggaagtcgaagtaccagccaagtccaaagaa 11673
Query: 626 aagacattggntggaatttgcagttggaacaaagtctgaaaatgggattttcaaatggta 685
|||||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 11674 aagacattgg-tggaa-ttgcaagtggaacaaagtctg-aaatgggattttcaaatggta 11730
Query: 686 gattcacaaggttaaagtttaaaacatctaccaaagggtcctgaa 730
|||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct: 11731 gattcacaaggtaaaagtttaaaacatctacaaaatggtcctgaa 11775
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6678
Number of Sequences: 1807
Number of extensions: 6678
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)