BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB04RM1.SCF screened BAC_end
(868 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1568 1522 0.0
>3x_Contig1568
Length = 12470
Score = 1522 bits (768), Expect = 0.0
Identities = 810/820 (98%), Gaps = 3/820 (0%)
Strand = Plus / Plus
Query: 47 cgagataaattttgggataagcccaattgaaatgattcttcgatgtaacttttctactaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7765 cgagataaattttgggataagcccaattgaaatgattcttcgatgtaacttttctactaa 7824
Query: 107 agccattacttaatcactttgttctagttattaggctgagaatattaaatgccacccaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7825 agccattacttaatcactttgttctagttattaggctgagaatattaaatgccacccaat 7884
Query: 167 ggctctacaggaagcaactttgtattaaagttctatcttccattatcgtttgctgaatat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7885 ggctctacaggaagcaactttgtattaaagttctatcttccattatcgtttgctgaatat 7944
Query: 227 gtctcaataaaataaaatgccttttcaattttgatatcaagaaatattgttcactgatga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7945 gtctcaataaaataaaatgccttttcaattttgatatcaagaaatattgttcactgatga 8004
Query: 287 aatatgatcaagacagacgctaaccatgaatgaataatcaatacaagcaacatctgatat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8005 aatatgatcaagacagacgctaaccatgaatgaataatcaatacaagcaacatctgatat 8064
Query: 347 atcgaaacaaacgcatatgatacagcaacatggattccagttcaacctttaggccgatct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8065 atcgaaacaaacgcatatgatacagcaacatggattccagttcaacctttaggccgatct 8124
Query: 407 ctatatcggacgagaaggatcttagtgtaccctttttagtggattggatactcgcggtaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8125 ctatatcggacgagaaggatcttagtgtaccctttttagtggattggatactcgcggtaa 8184
Query: 467 tattatgtatattggcgccattttacttaggtagaattctagcatgggtgctgacaaagg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8185 tattatgtatattggcgccattttacttaggtagaattctagcatgggtgctgacaaagg 8244
Query: 527 ggttggacttctgggtatggcgtcagtataagattaaaataaacctacaatcaataaagg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8245 ggttggacttctgggtatggcgtcagtataagattaaaataaacctacaatcaataaagg 8304
Query: 587 tgtcctttctaggtggacgaatcttcttcaagaatttaacagtagtctcgaatgatttta 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8305 tgtcctttctaggtggacgaatcttcttcaagaatttaacagtagtctcgaatgatttta 8364
Query: 647 caatctcatttttagagggtagttttacctggagatattggttattgcatacaaggattc 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8365 caatctcatttttagagggtagttttacctggagatattggttattgcatacaaggattc 8424
Query: 707 gcggaatagattttgaaagtgaagatggagatgcgagtgagaacgcttaaactt-cttgc 765
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 8425 gcggaatagattttgaaagtgaagatggagatgcgagtgagaacgc-taaacttccttgc 8483
Query: 766 aagtttcttttacaatgcgatggtctccgagttttcgtatataacaaatttgacgtttac 825
| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 8484 aggtttcttttacaatgcgatggtctcgaagttttcgtatataacaaaattgacgtttac 8543
Query: 826 gaatcagtactaaga-aacatttcacccacgtcaccaaag 864
||||||||||||||| | ||||||||| ||||||| ||||
Sbjct: 8544 gaatcagtactaagagatcatttcaccaacgtcacgaaag 8583
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6796
Number of Sequences: 1807
Number of extensions: 6796
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 868
length of database: 10,358,551
effective HSP length: 16
effective length of query: 852
effective length of database: 10,329,639
effective search space: 8800852428
effective search space used: 8800852428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)