BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZB05FM1.SCF screened BAC_end
         (938 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1571                                                        1366   0.0  

>3x_Contig1571 
          Length = 13536

 Score = 1366 bits (689), Expect = 0.0
 Identities = 792/816 (97%), Gaps = 9/816 (1%)
 Strand = Plus / Plus

                                                                        
Query: 90   gtggaaagagagcgagggattacaatcaaagcacagacatgctccatgttttaccaggat 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  gtggaaagagagcgagggattacaatcaaagcacagacatgctccatgttttaccaggat 704

                                                                        
Query: 150  cctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtggatttt 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  cctagaacgaaattggactatctcttacatttagtggatacaccgggccatgtggatttt 764

                                                                        
Query: 210  cgtgctgatttttcaagatcgtatgcatcgtgtggtggcgctttgttactcgttgacgct 269
            ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  cgtgctgaagtttcaagatcgtatgcatcgtgtggtggcgctttgttactcgttgacgct 824

                                                                        
Query: 270  tcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatggatttg 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  tcccaaggtgttcaagcacagacagtcgcaaacttttacctcgcttatagtatggatttg 884

                                                                        
Query: 330  aaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaagcagaa 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  aaacttattcctgtcataaacaagattgacttggacattgctgacattgaccaagcagaa 944

                                                                        
Query: 390  gaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagtgctaaa 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  gaacaggttgaaaatatgttcgagctacctaagtcagattgtatcaaagttagtgctaaa 1004

                                                                        
Query: 450  actggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcctccgacc 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 actggattgcacgtcgagcaattgttacccgctattgttgatagaatacctcctccgacc 1064

                                                                        
Query: 510  ggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactcttattta 569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ggtaaagttgagaaaccattacgtgcattattggtggattcgtggtatgactcttattta 1124

                                                                        
Query: 570  ggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaaatcatc 629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 ggagtggtgcttcttgtacatatagttgatggtcaagtgaaaagaggagataaaatcatc 1184

                                                                        
Query: 630  actgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtacccagatcgt 689
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 actgccgcaaatggattgaagtatgaagtgagggaatgcggtataatgtacccagatcgt 1244

                                                                        
Query: 690  gtcgctactaacacactgaaatcaggtcaagtcggttatttgggtacctggcatgaaaga 749
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 1245 gtcgctactaacacactgaaatcaggtcaagtcgggtattt-ggtacctggcatgaaaga 1303

                                                                        
Query: 750  at-ttaggatgccaagattggtgatactttgatgcatcctgggtaaaggttcgattactg 808
            || | |||||||||||||||||||||||||||||||| || |||||||  ||||||||||
Sbjct: 1304 atctaaggatgccaagattggtgatactttgatgcat-ctcggtaaagaatcgattactg 1362

                                                                        
Query: 809  aagtgtttcccaggatttgaagaacccaaaaccatggttcttcgttgggagcttttcctt 868
            ||||| || ||||||||||||||||| ||| |||||| |||||| | |||||||| ||| 
Sbjct: 1363 aagtg-ttaccaggatttgaagaaccaaaacccatgg-tcttcg-taggagctttccct- 1418

                                                
Query: 869  ggtggatggggccgaatttcaaagcgtttgacgatg 904
             |  |||||||||||| ||||||||||| |||||||
Sbjct: 1419 -gctgatggggccgaa-ttcaaagcgttagacgatg 1452


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5273
Number of Sequences: 1807
Number of extensions: 5273
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)