BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB06FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig304 1419 0.0
>3x_Contig304
Length = 1230
Score = 1419 bits (716), Expect = 0.0
Identities = 770/783 (98%), Gaps = 4/783 (0%)
Strand = Plus / Plus
Query: 85 tcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatgctaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tcacttctgtgtcgaagaggcatatgaccttaggaatggaaggtttgttgacgatgctaa 138
Query: 145 ggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaacttgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ggacaatttcatatttgatgattctcagatattacccttagatgaggtcgtagaacttgt 198
Query: 205 ccaaaacctcattttttaatacttgattccacacaacagagcggaacactcttggaaaag 264
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccaaaacctcattgataaatacttgattccacacaacagagcggaacactcttggaaaag 258
Query: 265 agcattggttgggcatggtatatcaggggatattagctggctagaatcgttggacataag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agcattggttgggcatggtatatcaggggatattagctggctagaatcgttggacataag 318
Query: 325 attaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacggaag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attaccgaataatgttcaaaccttggatacccaaaaattattcgagaatatgtacggaag 378
Query: 385 acaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttcataa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acaatcatcactcaagaggctactgaatttatgcagaataccacactcctaccttcataa 438
Query: 445 cgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatataggaac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgcggggaatgattcctactacactctacagttacttttgtcaatgtgcgatataggaac 498
Query: 505 aagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatttata 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aagaatcaagttggatttggacaattggcatcatgtaagaagattagaggagaatttata 558
Query: 565 ttgtgtggagcagctcgaaaaacaagggaagcgtaaaagaaatcgtggaaacaatttctc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgtgtggagcagctcgaaaaacaagggaagcgtaaaagaaatcgtggaaacaatttctc 618
Query: 625 acaacgctaagaaatgcattttttctacaatattcgcgctgatattacagtatatagatg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 acaacgctaagaaatgcattttttctacaatattcgcgctgatattacagtatatagatg 678
Query: 685 tgcatacgttatgctcatatatatattatattttgctgccccgtatcacagttcaacctt 744
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 679 tgcatacgttatgctcatatatatattatattttgctgcccgtaatcacagttcaacctt 738
Query: 745 tcttgtctncagccagaaaatgtttgatttcctactgtttgtcgtacatatgttcgtcta 804
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcttgtctccagccagaaaatgtttgatttcctactgtttgtcgtacatatgttcgtcta 798
Query: 805 cctcacaactttttct-aagtatt-aaaaagagag-aaatttattttc-agagtattaga 860
|||||||||||||||| ||||||| |||||||||| |||||||| ||| |||||| ||||
Sbjct: 799 cctcacaactttttctaaagtattaaaaaagagagaaaatttatattcaagagtaataga 858
Query: 861 gaa 863
|||
Sbjct: 859 gaa 861
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6790
Number of Sequences: 1807
Number of extensions: 6790
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)