BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB06RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1614 0.0
>3x_Contig1680
Length = 12597
Score = 1614 bits (814), Expect = 0.0
Identities = 863/875 (98%), Gaps = 4/875 (0%)
Strand = Plus / Minus
Query: 48 cagatgtttacgagctagtaacacaggaccaattacatgataacgaacaaatcatttctc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11435 cagatgtttacgagctagtaacacaggaccaattacatgataacgaacaaatcatttctc 11376
Query: 108 cagaggaaaagcagttgttgaaatcaacttatttgacatcatttgtactattgaaaggtg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11375 cagaggaaaagcagttgttgaaatcaacttatttgacatcatttgtactattgaaaggtg 11316
Query: 168 aaacagtcattatgccatatatcaaggacacaatattcgacttcagacaatgtgaggctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11315 aaacagtcattatgccatatatcaaggacacaatattcgacttcagacaatgtgaggctc 11256
Query: 228 gtgttagattacaagatgttacaactgatgaagaagatgccaaaaatgatacggaaactg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11255 gtgttagattacaagatgttacaactgatgaagaagatgccaaaaatgatacggaaactg 11196
Query: 288 aagatgaactgacaaaagtcgacttacacagtgatgaattccatgacgaagacttctcgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11195 aagatgaactgacaaaagtcgacttacacagtgatgaattccatgacgaagacttctcgt 11136
Query: 348 tggaagaacaggaatctgttgctaatatgataccaatgagcacagtcgagtgttcgccac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11135 tggaagaacaggaatctgttgctaatatgataccaatgagcacagtcgagtgttcgccac 11076
Query: 408 cgacacctcagtgcatgaaaccatcggttttaccagtggctataagacatacttctgata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11075 cgacacctcagtgcatgaaaccatcggttttaccagtggctataagacatacttctgata 11016
Query: 468 ctgaaagacctaatgtggaacgtaccaagtgcaagctgaccccatatagctctttcacaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11015 ctgaaagacctaatgtggaacgtaccaagtgcaagctgaccccatatagctctttcacaa 10956
Query: 528 taaagactccaaatgctccgaagaaattagaagcaagtactccagttaaggacatgacta 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10955 taaagactccaaatgctccgaagaaattagaagcaagtactccagttaaggacatgacta 10896
Query: 588 cacctagcaaggttaaggtggatgagaacgccgatgaagtccgtcgtcgtaa-ttaaaca 646
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10895 cacctagcaaggttaaggtggatgagaacgccgatgaagtccgtcgtcgtaagttaaaca 10836
Query: 647 ctccctcgccaaagaagaaatccanaaagaaatcaagaaagcaaattgacagtgatgaag 706
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10835 ctccctcgccaaagaagaaatccaaaaagaaatcaagaaagcaaattgacagtgatgaag 10776
Query: 707 cttcanaagaacaaactctttcctctttgactacangggggggtagattacaaagaatta 766
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 10775 cttcaaaagaacaaactctttcctctttgactacaa-ggggggtagattacaaagaatta 10717
Query: 767 cagcatgtattgttcaatcactttagcattctctaacattcaaccagtgccactctttca 826
||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 10716 cagcatgtattgtccaatcac-ttagcattctctaacattcaacaagtgccactctttca 10658
Query: 827 attgcaggatgttaactcttgtgtctcgaagttaagccgcacagaactgcgccgctattt 886
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 10657 attgcaggatgttaactctgttgtctcgaagttaagccgcacagaactgcg-cgctattt 10599
Query: 887 tgaatgacgaacaatgaatcggagtaatttaccgt 921
|||||||||||||||| ||||||||||||||||||
Sbjct: 10598 tgaatgacgaacaatgtatcggagtaatttaccgt 10564
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6639
Number of Sequences: 1807
Number of extensions: 6639
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)