BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB07FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1271 0.0
>3x_Contig1531
Length = 8774
Score = 1271 bits (641), Expect = 0.0
Identities = 750/773 (97%), Gaps = 14/773 (1%)
Strand = Plus / Plus
Query: 90 tccaagctatccgacactgaaggatcacgtttgaattttgtcaatgctactacccatgaa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1855 tccaagctatccgacactgaaggatcacgtttgaattttgtcaatgctactacccatgaa 1914
Query: 150 ctcactttgagggtgttctgtacctcatctatgttgaagtcataggactcctcaagatgt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915 ctcactttgagggtgttctgtacctcatctatgttgaagtcataggactcctcaagatgt 1974
Query: 210 tgcttctgaaccgagctagagaacgatgactctcgaccataagtaccgtcacttcctctt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975 tgcttctgaaccgagctagagaacgatgactctcgaccataagtaccgtcacttcctctt 2034
Query: 270 cgcttagccaccttcatggatggcaattcggtatcattcatcctgggcaacaaatcctca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2035 cgcttagccaccttcatggatggcaattcggtatcattcatcctgggcaacaaatcctca 2094
Query: 330 tcaccaaagcacaattgcaaaagatctgaatccaaatcctggatattctcataaagagag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2095 tcaccaaagcacaattgcaaaagatctgaatccaaatcctggatattctcataaagagag 2154
Query: 390 tgtatctgctcattggtatcgacaacagcttggtagttgcttttcaatgccttcccaaat 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 tgtatctgctcattggtatcgacaacagcttggtagttgcttttcaatgccttcccaaat 2214
Query: 450 tcctcacgaagtttaaccacatctctactcaattgaacagaaatgtccctcacttcggcc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 tcctcacgaagtttaaccacatctctactcaattgaacagaaatgtccctcacttcggcc 2274
Query: 510 acagatttctctctaaatagactagcagacatatcagtataacanacagacagttagctt 569
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2275 acagatttctctctaaatagactagcagacatatcagtataacaaacagacagttagctt 2334
Query: 570 tcgttacttctattttcaacggataatacgtgtatgtgaacgtgaatgcgaatgcgtgta 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 tcgttacttctattttcaacggataatacgtgtatgtgaacgtgaatgcgaatgcgtgta 2394
Query: 630 tctgctttcaagatt-aacacttttcgtcgtcattcaatgagtttatc-taacaaagctg 687
||||||| ||||||| ||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct: 2395 tctgcttccaagattcaacac-tttcgtcgtcattcaatgag-ttatcttaacaaagctg 2452
Query: 688 tggtttctctttaccatccatttggttctcagactgaatatattggggtacagctgaacc 747
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 2453 tggtttctctttaccatcca-ttggttctcagactgaatatatt-gggtacagctgaaca 2510
Query: 748 aaggtcatgaaattggaatttattcaaaaaacaaaagatctttttagctttccttttgac 807
||| ||||||||||| |||||| |||||||||||||| ||| || ||| ||| ||||||
Sbjct: 2511 aagttcatgaaattgaaattta-tcaaaaaacaaaag-tctattaagc--tccctttgac 2566
Query: 808 agtcgaaccggcgccttctttgtttttttttcttgaggaattccacttttttt 860
|||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 2567 agtcgaaccggcgc--tctttgtttttttt--ctgaggaattccacttttttt 2615
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7526
Number of Sequences: 1807
Number of extensions: 7526
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)