BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC47ZB07RM1.SCF screened BAC_end (886 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig515 1467 0.0 >3x_Contig515 Length = 1717 Score = 1467 bits (740), Expect = 0.0 Identities = 806/820 (98%), Gaps = 6/820 (0%) Strand = Plus / Minus Query: 54 cggtgtttaccctttgagagaactctcgttgactctttccaattttgatataatagacaa 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1426 cggtgtttaccctttgagagaactctcgttgactctttccaattttgatataatagacaa 1367 Query: 114 ggggaaaactgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttcaactga 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1366 ggggaaaactgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttcaactga 1307 Query: 174 taacaacgtcgtaaagatagaaggtgaagacatacattcagattcgaaaggtggccctta 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1306 taacaacgtcgtaaagatagaaggtgaagacatacattcagattcgaaaggtggccctta 1247 Query: 234 tgatgcgtctgtttcagagacactcgagggagaaccaccaagtgcttcttctcctcctac 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1246 tgatgcgtctgtttcagagacactcgagggagaaccaccaagtgcttcttctcctcctac 1187 Query: 294 aatggctgaaaatttaacttgcaaacagtgcggggaaactctacaggacaaaaaactgtt 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1186 aatggctgaaaatttaacttgcaaacagtgcggggaaactctacaggacaaaaaactgtt 1127 Query: 354 ccaagagcacgtcgattatcatctatcagttcaattatcagaacagattaacggagtatc 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1126 ccaagagcacgtcgattatcatctatcagttcaattatcagaacagattaacggagtatc 1067 Query: 414 agagaactcaacaatgctgacgcacgcagaaagaatccttctcttcggaaagaaagctaa 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 agagaactcaacaatgctgacgcacgcagaaagaatccttctcttcggaaagaaagctaa 1007 Query: 474 gaagaatgccgcatcagtgcaaaaacccaaaaaaaaagatggaggaatcatgaagttctt 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 gaagaatgccgcatcagtgcaaaaacccaaaaaaaaagatggaggaatcatgaagttctt 947 Query: 534 caagaagtgataaatctccacccacatatacttgtatatttatagttaatcgtatcatcg 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 caagaagtgataaatctccacccacatatacttgtatatttatagttaatcgtatcatcg 887 Query: 594 tcttaccagtggcatttatatgaggagcgtggttagtaacgaggttccagtcgcatatcc 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 886 tcttaccagtggcatttatatgaggagcgtggttagtaacgaggttccagtcgcatatcc 827 Query: 654 gggtaatatcttgcttttcgtctttcttttcttttctgaattccacattcgatttcgaac 713 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 826 gggtaatatcttgcttttcgtctttc-tttcttttctgaattccacattcgatttcgaac 768 Query: 714 ttaaaatagacatttaagagatccaatgtttgttaaataagtgtgtaagtttgaaatttt 773 |||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct: 767 ttaaaatagacaattaagagatccaatgtttgttaaataagtgtgtaag-ttgtaatttt 709 Query: 774 agcccagatctttttaccctcaaagagtcaacaggnaagaggggagcaagcgatacccag 833 || ||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||| Sbjct: 708 ag-ccagatctttttaacctcaaaaggtcaacagg-aagagggaagcaagcgatacccag 651 Query: 834 cgttnaaaagcagcttacgcaccacatattctctggacag 873 |||| |||||||||| ||||| ||||||||||||| |||| Sbjct: 650 cgtt-aaaagcagctaacgca-cacatattctctgaacag 613 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7357 Number of Sequences: 1807 Number of extensions: 7357 Number of successful extensions: 77 Number of sequences better than 1.0e-20: 1 length of query: 886 length of database: 10,358,551 effective HSP length: 16 effective length of query: 870 effective length of database: 10,329,639 effective search space: 8986785930 effective search space used: 8986785930 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)