BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZB07RM1.SCF screened BAC_end
         (886 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig515                                                         1467   0.0  

>3x_Contig515 
          Length = 1717

 Score = 1467 bits (740), Expect = 0.0
 Identities = 806/820 (98%), Gaps = 6/820 (0%)
 Strand = Plus / Minus

                                                                        
Query: 54   cggtgtttaccctttgagagaactctcgttgactctttccaattttgatataatagacaa 113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1426 cggtgtttaccctttgagagaactctcgttgactctttccaattttgatataatagacaa 1367

                                                                        
Query: 114  ggggaaaactgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttcaactga 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1366 ggggaaaactgtccttgatatgttcggtaatcgagcaatctcaaaatcatcttcaactga 1307

                                                                        
Query: 174  taacaacgtcgtaaagatagaaggtgaagacatacattcagattcgaaaggtggccctta 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1306 taacaacgtcgtaaagatagaaggtgaagacatacattcagattcgaaaggtggccctta 1247

                                                                        
Query: 234  tgatgcgtctgtttcagagacactcgagggagaaccaccaagtgcttcttctcctcctac 293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1246 tgatgcgtctgtttcagagacactcgagggagaaccaccaagtgcttcttctcctcctac 1187

                                                                        
Query: 294  aatggctgaaaatttaacttgcaaacagtgcggggaaactctacaggacaaaaaactgtt 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1186 aatggctgaaaatttaacttgcaaacagtgcggggaaactctacaggacaaaaaactgtt 1127

                                                                        
Query: 354  ccaagagcacgtcgattatcatctatcagttcaattatcagaacagattaacggagtatc 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 ccaagagcacgtcgattatcatctatcagttcaattatcagaacagattaacggagtatc 1067

                                                                        
Query: 414  agagaactcaacaatgctgacgcacgcagaaagaatccttctcttcggaaagaaagctaa 473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 agagaactcaacaatgctgacgcacgcagaaagaatccttctcttcggaaagaaagctaa 1007

                                                                        
Query: 474  gaagaatgccgcatcagtgcaaaaacccaaaaaaaaagatggaggaatcatgaagttctt 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gaagaatgccgcatcagtgcaaaaacccaaaaaaaaagatggaggaatcatgaagttctt 947

                                                                        
Query: 534  caagaagtgataaatctccacccacatatacttgtatatttatagttaatcgtatcatcg 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  caagaagtgataaatctccacccacatatacttgtatatttatagttaatcgtatcatcg 887

                                                                        
Query: 594  tcttaccagtggcatttatatgaggagcgtggttagtaacgaggttccagtcgcatatcc 653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  tcttaccagtggcatttatatgaggagcgtggttagtaacgaggttccagtcgcatatcc 827

                                                                        
Query: 654  gggtaatatcttgcttttcgtctttcttttcttttctgaattccacattcgatttcgaac 713
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 826  gggtaatatcttgcttttcgtctttc-tttcttttctgaattccacattcgatttcgaac 768

                                                                        
Query: 714  ttaaaatagacatttaagagatccaatgtttgttaaataagtgtgtaagtttgaaatttt 773
            |||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 767  ttaaaatagacaattaagagatccaatgtttgttaaataagtgtgtaag-ttgtaatttt 709

                                                                        
Query: 774  agcccagatctttttaccctcaaagagtcaacaggnaagaggggagcaagcgatacccag 833
            || ||||||||||||| |||||||  ||||||||| ||||||| ||||||||||||||||
Sbjct: 708  ag-ccagatctttttaacctcaaaaggtcaacagg-aagagggaagcaagcgatacccag 651

                                                    
Query: 834  cgttnaaaagcagcttacgcaccacatattctctggacag 873
            |||| |||||||||| ||||| ||||||||||||| ||||
Sbjct: 650  cgtt-aaaagcagctaacgca-cacatattctctgaacag 613


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7357
Number of Sequences: 1807
Number of extensions: 7357
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)