BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB08FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1370 0.0
>3x_Contig1801
Length = 57606
Score = 1370 bits (691), Expect = 0.0
Identities = 767/787 (97%), Gaps = 4/787 (0%)
Strand = Plus / Plus
Query: 86 agaggtatggtagataaagaaatcgtttacgctactgtcgatgttaataaacgtattgct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18337 agaggtatggtagataaagaaatcgtttacgctactgtcgatgttaataaacgtattgct 18396
Query: 146 gattgtgctgatgcaaacgatctttatcgtctaatatgggagatccagatggatccattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397 gattgtgctgatgcaaacgatctttatcgtctaatatgggagatccagatggatccattg 18456
Query: 206 ctacgagatattttcactttgaagcactattaccacattatcaacagtccgaacttttct 265
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18457 ctacgagataaggccactttgaagcactattaccacattatcaacagtccgaacttttct 18516
Query: 266 gttgctaaatgtgcagaattactcgattgcatagatatgatcaaatattcaaagacagac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18517 gttgctaaatgtgcagaattactcgattgcatagatatgatcaaatattcaaagacagac 18576
Query: 326 attatgatcatggccatatacaaattaaataaccccactgtcacaagcaaatatgtgaag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18577 attatgatcatggccatatacaaattaaataaccccactgtcacaagcaaatatgtgaag 18636
Query: 386 gagttaattagcatatacccttcattgaaccagttctcgcagaaacttacgttgagaatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18637 gagttaattagcatatacccttcattgaaccagttctcgcagaaacttacgttgagaatc 18696
Query: 446 ctacgcggtgcaaatagactccaggaactctttgatacacaaaacgatcaaattcataca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18697 ctacgcggtgcaaatagactccaggaactctttgatacacaaaacgatcaaattcataca 18756
Query: 506 attacaggtaaccactctcaagtggtcatgatcttccaaaccttgttccgcagtgcttac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18757 attacaggtaaccactctcaagtggtcatgatcttccaaaccttgttccgcagtgcttac 18816
Query: 566 aaacttccggaacacctaatagacgaaagcactgaactcactccactacagagatctttc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18817 aaacttccggaacacctaatagacgaaagcactgaactcactccactacagagatctttc 18876
Query: 626 tgttcaagtgtaagagttttatcagaatattcctcagcacaaccaaaacttgccaaatgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18877 tgttcaagtgtaagagttttatcagaatattcctcagcacaaccaaaacttgccaaatgt 18936
Query: 686 tgttctcaaatggtgaaagcatctttcatgaacaaagt-agccattgcattaaaggatca 744
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct: 18937 tgttctcaaatggtgaaagcatctttcatgaacaaagtaagccattgcaataaagaatca 18996
Query: 745 gagcattccatcaatattaatgagtataaaattctcaaatacttggaagaaacgtttgga 804
|||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||
Sbjct: 18997 gagcattccatcaatattaatgagtataaattcctcaaatacatggaagaaacg-ttgga 19055
Query: 805 ggtttggctcattatcgctggacttgacgatttctttttatgattcctgccaggaggatt 864
| ||| |||| |||||||||||| ||||||||| || ||||||||||| |||||||||
Sbjct: 19056 agattgtctcaatatcgctggactcgacgatttc-ttctatgattcctg-caggaggatc 19113
Query: 865 ctatgct 871
|||||||
Sbjct: 19114 ctatgct 19120
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6030
Number of Sequences: 1807
Number of extensions: 6030
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)