BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB08RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1767 1364 0.0
>3x_Contig1767
Length = 23302
Score = 1364 bits (688), Expect = 0.0
Identities = 745/760 (98%), Gaps = 3/760 (0%)
Strand = Plus / Minus
Query: 48 tgactttcgtcaacatttacataatgtctaagaactgaaaatatcgatgagccctcgaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12464 tgactttcgtcaacatttacataatgtctaagaactgaaaatatcgatgagccctcgaaa 12405
Query: 108 agacagacattttgccaagacggatgccgaaagggttctaggaaataaaaagggtgagct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12404 agacagacattttgccaagacggatgccgaaagggttctaggaaataaaaagggtgagct 12345
Query: 168 taccaaggggtcacacagagccgaactgcattttgaaatgcctgaatacatctggctttc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12344 taccaaggggtcacacagagccgaactgcattttgaaatgcctgaatacatctggctttc 12285
Query: 228 taatcttaacgggaacatacacattcccgagcgattgttgtctttattgaacgaggaaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12284 taatcttaacgggaacatacacattcccgagcgattgttgtctttattgaacgaggaaga 12225
Query: 288 ccaggatattcccgatgaggttaaagagtttacatatgtacagcaacttgacaagaattt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12224 ccaggatattcccgatgaggttaaagagtttacatatgtacagcaacttgacaagaattt 12165
Query: 348 actttcgcggacttctgttattggtctagggtttgggttgatgagtcccgtacttggtat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12164 actttcgcggacttctgttattggtctagggtttgggttgatgagtcccgtacttggtat 12105
Query: 408 gagcactactatgagtattggattgctaaatggtggatctccatcgataatatttgggta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12104 gagcactactatgagtattggattgctaaatggtggatctccatcgataatatttgggta 12045
Query: 468 tctgatatgtgggataatgacgtggattag-ttcactgtcgctcagtgagatagtctcga 526
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 12044 tctgatatgtgggataatgacgtggattagtttcactgtcgctcagtgagatagtctcga 11985
Query: 527 agtaccccatagaacttcacggtgcagcggccatgcttgcgcctggcagacttcggttgc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11984 agtaccccatagaacttcacggtgcagcggccatgcttgcgcctggcagacttcggttgc 11925
Query: 587 gtatgtcttggtactgtggttggctaatggtgtttggaagtt-gacgatgagcactagta 645
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 11924 gtatgtcttggtactgtggttggctaatgttgtttggaagttggacgatgagcactagta 11865
Query: 646 ttacgtttgccggtgcacaattgattatttctttgctgacaatgactaatgaatctctga 705
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11864 ttacgtttgcgggtgcacaattgattatttctttgctgacaatgactaatgaatctctga 11805
Query: 706 tagacttccggtggttgacgttatggactgggctaatagtttatctcatttggactgggg 765
|||||| ||||||||||||||||||||||| |||||| ||||||||||| ||||| ||
Sbjct: 11804 tagactcccggtggttgacgttatggactgtgctaatgttttatctcattgtgactgtgg 11745
Query: 766 ttggagtcattaattttaaattttcaggttt-attgaaac 804
|||||||||||||| | ||||||||| |||| ||||||||
Sbjct: 11744 ttggagtcattaatctaaaattttcaagtttcattgaaac 11705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5644
Number of Sequences: 1807
Number of extensions: 5644
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)