BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB09FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1302 0.0
>3x_Contig1705
Length = 16734
Score = 1302 bits (657), Expect = 0.0
Identities = 713/727 (98%), Gaps = 4/727 (0%)
Strand = Plus / Plus
Query: 87 aggatataggctcaggaatggtaattttggtgatttatggtctgcaattatgacaaatgg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5953 aggatataggctcaggaatggtaattttggtgatttatggtctgcaattatgacaaatgg 6012
Query: 147 caagtcgactgtattgcaattccataccgaagaaactacccttacaagaataaatggtat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6013 caagtcgactgtattgcaattccataccgaagaaactacccttacaagaataaatggtat 6072
Query: 207 agcaaaacgaattgtggttaaagttgaaagtataggtgctaagaagattggaatagctac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6073 agcaaaacgaattgtggttaaagttgaaagtataggtgctaagaagattggaatagctac 6132
Query: 267 gtcaattgactcatcaatgggattttcagtcggcgttgccggcttaatgctgtcgttgaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6133 gtcaattgactcatcaatgggattttcagtcggcgttgccggcttaatgctgtcgttgaa 6192
Query: 327 agattgtataccttggtttttacattcgattccgcgaaacgatttggaagtggacatcat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6193 agattgtataccttggtttttacattcgattccgcgaaacgatttggaagtggacatcat 6252
Query: 387 atttatcaatgactgggaatcagttaagtaccttaatggtagtgaaaagtggtaccaatg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6253 atttatcaatgactgggaatcagttaagtaccttaatggtagtgaaaagtggtaccaatg 6312
Query: 447 gattattgtatgtgatcggtctattaaacataggaatgattatcaaaataatgtcatctc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6313 gattattgtatgtgatcggtctattaaacataggaatgattatcaaaataatgtcatctc 6372
Query: 507 attgaaagattttataggagaggtgacagatgacccggagttcaaatatgacccanaaga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6373 attgaaagattttataggagaggtgacagatgacccggagttcaaatatgacccaaaaga 6432
Query: 567 ctctggagatgatgccaaaattntggcgtatatttcgaatttattt-gaggtaccaccag 625
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 6433 ctctggagatgatgccaaaattttggcgtatatttcgaatttatttggaggtaccaccag 6492
Query: 626 ctttactcaaatgtgtcttgtcagtagtgtgtcgtcatttatcaaaagttt-ccattggg 684
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6493 ctttactcaaatgtgtcttgtcagtagtgtgtcgtcatttatcaaaagtttcccattggg 6552
Query: 685 acattcgcttagtgaagcagatcatcttacaatatctatgagcacacaatggagacattc 744
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6553 acattcgctaggtgaagcagatcatctaacaatatctatgagcacacaatggagacattc 6612
Query: 745 actattctttcagagctgggttaaaacacctgtcagttttgtttcacggggggctttgtt 804
||||| | |||||||||||||||||||| |||||||||||||| ||| || |||| ||||
Sbjct: 6613 actatccattcagagctgggttaaaaca-ctgtcagttttgttacac-ggtggctctgtt 6670
Query: 805 tcattca 811
|||||||
Sbjct: 6671 tcattca 6677
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6508
Number of Sequences: 1807
Number of extensions: 6508
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)