BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB09RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1251 0.0
>3x_Contig1730
Length = 17223
Score = 1251 bits (631), Expect = 0.0
Identities = 708/729 (97%), Gaps = 4/729 (0%)
Strand = Plus / Plus
Query: 46 taaacttcatttaatctattgagcaagttttcttccaattgtttgaataaccataaaatc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8877 taaacttcatttaatctattgagcaagttttcttccaattgtttgaataaccataaaatc 8936
Query: 106 attgaattattgaatcaaagagaccactatatacagagtcatgttttccagagtatttgt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8937 attgaattattgaatcaaagagaccactatatacagagtcatgttttccagagtatttgt 8996
Query: 166 tcgttctatggcagcttctgccaaggctggtgttaagcctccagtgcaattgttcggttt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997 tcgttctatggcagcttctgccaaggctggtgttaagcctccagtgcaattgttcggttt 9056
Query: 226 ggatggtacctatgccactgcattgttcactgctgcctcaaagaccacttccgttgaagc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9057 ggatggtacctatgccactgcattgttcactgctgcctcaaagaccacttccgttgaagc 9116
Query: 286 tgctgcttcctcattgaatgctttgaaggaaactgttgccaaggacaccaagttgaccag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9117 tgctgcttcctcattgaatgctttgaaggaaactgttgccaaggacaccaagttgaccag 9176
Query: 346 cattttggaaaacccagccttgtctgctgaagatagaaacattgttgttgacactttgtc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9177 cattttggaaaacccagccttgtctgctgaagatagaaacattgttgttgacactttgtc 9236
Query: 406 caagaaaatcaatttggatcaatccgttcaaaacttgttgaaggttttggctgaaaacaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9237 caagaaaatcaatttggatcaatccgttcaaaacttgttgaaggttttggctgaaaacaa 9296
Query: 466 cagattatccttgttagaacatgtcacttcccaattctccaagttgactgatgcttacca 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9297 cagattatccttgttagaacatgtcacttcccaattctccaagttgactgatgcttacca 9356
Query: 526 tggntcttgtgcaagcgactgttaccactgctcaacctttggactctaagttgttcaaga 585
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9357 tgg-tcttgtgcaagcgactgttaccactgctcaacctttggactctaagttgttcaaga 9415
Query: 586 gagtggaaaaggccctggctgctttctctttggttggtaaggggtaagtctttgaaattg 645
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 9416 gagtggaaaaggccttggctgcttcctctttggttggtaa-gggtaagtctttgaaattg 9474
Query: 646 aagaacgttgtcaagcctggaattcanngtggtttaatcgtttgaag-ttccgacagaac 704
|||||||||||||||||| ||| || |||||||||||| |||||| ||||||||||||
Sbjct: 9475 gagaacgttgtcaagcctgaaatccaaggtggtttaatcg-ttgaagtttccgacagaac 9533
Query: 705 cggcgatttgtcaattgctttcagaatcaacagtttgaaccagtttttaagaaaaccttt 764
|| ||||||||||||||||| ||||||||||| |||||||| || ||||| || || |
Sbjct: 9534 cgtcgatttgtcaattgcttccagaatcaacaagttgaaccaagttctaagagaagctat 9593
Query: 765 ttaaacgat 773
|||||||||
Sbjct: 9594 ttaaacgat 9602
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8816
Number of Sequences: 1807
Number of extensions: 8816
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)