BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB10FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1776 1207 0.0
>3x_Contig1776
Length = 26138
Score = 1207 bits (609), Expect = 0.0
Identities = 676/689 (98%), Gaps = 7/689 (1%)
Strand = Plus / Plus
Query: 87 tgtgtcagttaaagcatttaaaatttccacgattttttgtaatgatgaatagatttggga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9380 tgtgtcagttaaagcatttaaaatttccacgattttttgtaatgatgaatagatttggga 9439
Query: 147 atcaatctttgccaattcctccgattgtaagacaagagtatccaaggatccaatcttgaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9440 atcaatctttgccaattcctccgattgtaagacaagagtatccaaggatccaatcttgaa 9499
Query: 207 atctgggatagggaaatctgatacgtaacttctaccagaaatcaatccagtttcaagcca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9500 atctgggatagggaaatctgatacgtaacttctaccagaaatcaatccagtttcaagcca 9559
Query: 267 tgtggaaacatctctctcagggttttgtgaaggtttagcattctccggcaaggatactag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9560 tgtggaaacatctctctcagggttttgtgaaggtttagcattctccggcaaggatactag 9619
Query: 327 tataaaatctttagcagtgtacaatgcagttgtcatgttgtaatcagttttatattctgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9620 tataaaatctttagcagtgtacaatgcagttgtcatgttgtaatcagttttatattctgt 9679
Query: 387 atctttttttctgatgtttggctggtgactatcgtgatgtacaaactatcaatgaggatg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9680 atctttttttctgatgtttggctggtgactatcgtgatgtacaaactatcaatgaggatg 9739
Query: 447 ttaaagtttgaccgtgtagaataaaatgagaaaacttaaaaagaagtcacgacttttttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9740 ttaaagtttgaccgtgtagaataaaatgagaaaacttaaaaagaagtcacgacttttttt 9799
Query: 507 cttaggtaaattgcagcaaacgattggagattagattactcactaaaagggctgcttatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9800 cttaggtaaattgcagcaaacgattggagattagattactcactaaaagggctgcttatc 9859
Query: 567 tgctctttttcctattgcattgaccctttatggttgaaaacccctatcagttgtatccac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9860 tgctctttttcctattgcattgaccctttatggttgaaaacccctatcagttgtatccac 9919
Query: 627 ttctttaattttaaaacgagattaatctattaagaagatttcgaaaatttagttgaatgc 686
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9920 ttcttaaattttaaaacgagattaatctattaagaagatttcgaaaa-ttagttgaatgc 9978
Query: 687 tttccatattgagggaaatatcgttttgaaggtgattaaagagtccaaatgtataacgac 746
||||||| ||| |||||||||| | |||| ||||||||||||| |||||||||||||||
Sbjct: 9979 -ttccata-tgaaggaaatatcg-tatgaa-gtgattaaagagt-caaatgtataacgac 10033
Query: 747 ttgcaccatttctgggttggtgcagttac 775
|||||||| ||| || ||||||||||||
Sbjct: 10034 atgcaccatatct-ggctggtgcagttac 10061
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7428
Number of Sequences: 1807
Number of extensions: 7428
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)