BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB10RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig669 664 0.0
>3x_Contig669
Length = 2015
Score = 664 bits (335), Expect = 0.0
Identities = 461/486 (94%), Gaps = 14/486 (2%)
Strand = Plus / Plus
Query: 309 gtaaaagttcatcaactgatttgttggttagagcagggctgctgctggacgattttttac 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtaaaagttcatcaactgatttgttggttagagcagggctgctgctggacgattttttac 60
Query: 369 ctttcttttgagaaatattagctggtttag-ttgcttgctgagcggaagcgag-tttctt 426
|||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct: 61 ctttcttttgagaaatattagctggtttagcttgcttgctgagcggaagcgcgctttctt 120
Query: 427 ttcttgttgttgcttagtaataatacctttaatagtttcggaccattgtttcgaagtcaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcttgttgttgcttagtaataatacctttaatagtttcggaccattgtttcgaagtcaa 180
Query: 487 ggtagtttgatcatttaaccctaattctttcgagaaaatggatttggctttctcaatatg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtagtttgatcatttaaccctaattctttcgagaaaatggatttggctttctcaatatg 240
Query: 547 agataatgcatgagacatgtcatccaaagaagtatacaagttggcaatacgtgattcatt 606
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 agataatgcatgagacatgtcatccaaagaggtatacaagttggcaatacgtgattcatt 300
Query: 607 ttgaccatatgggtatgttttctcgctaccagtgatctttagaagccactcagacagctt 666
|||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 301 ttgaccatatggtaatgtttcttcgctaccagtgatctttagaagcaactcagacagctt 360
Query: 667 gtttcaaaatctttgatctgaacttttcttatccttcagtacttagcagcattttggaat 726
| ||||||||| ||||||||||| |||||||||| ||||||| |||||||| ||||||||
Sbjct: 361 g-ttcaaaatc-ttgatctgaac-tttcttatcc-tcagtac-tagcagcaatttggaat 415
Query: 727 taattaatttgaataccattaacccctaccaggagtggaccaaaaggagcttaaagactt 786
| ||| ||||||| |||||| |||||||| ||||||| ||||||||||| |||| |||
Sbjct: 416 --aataaattgaata-cattaa-ccctacca-gagtgga-caaaaggagctaaaag-ctt 468
Query: 787 caataa 792
||||||
Sbjct: 469 caataa 474
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,090
Number of Sequences: 1807
Number of extensions: 10090
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)