BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB11FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1423 0.0
>3x_Contig1738
Length = 21411
Score = 1423 bits (718), Expect = 0.0
Identities = 812/833 (97%), Gaps = 9/833 (1%)
Strand = Plus / Plus
Query: 86 ttcccaaaaaacacaccagaaaatacgtttttgaggaaaatgcatagagattattaccta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16988 ttcccaaaaaacacaccagaaaatacgtttttgaggaaaatgcatagagattattaccta 17047
Query: 146 gtttctattgtacaccatgatttcatcaaccctgacggattgtgggacttgctactgagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17048 gtttctattgtacaccatgatttcatcaaccctgacggattgtgggacttgctactgagt 17107
Query: 206 tagcaatgtgtcctacgaattacgtttcccattggcattcaaagtaggattttgtgaatc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17108 tagcaatgtgtcctacgaattacgtttcccattggcattcaaagtaggattttgtgaatc 17167
Query: 266 tagttcattctgtaaatactcagtgactttctgtagtttaccgtcgttccattgctgtat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17168 tagttcattctgtaaatactcagtgactttctgtagtttaccgtcgttccattgctgtat 17227
Query: 326 aagtccatacatcagtttaaccgtactattattgaaagtaaacatgcccctattgaactt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17228 aagtccatacatcagtttaaccgtactattattgaaagtaaacatgcccctattgaactt 17287
Query: 386 agcgccaggaaggatgatcaatttggaacccaagaaacaggtcttaagagctggaattgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17288 agcgccaggaaggatgatcaatttggaacccaagaaacaggtcttaagagctggaattgg 17347
Query: 446 atccaggttgattgcataaaatagattccccttcttatcttgtaagataagtttatatac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17348 atccaggttgattgcataaaatagattccccttcttatcttgtaagataagtttatatac 17407
Query: 506 atgttgattgagatttccagcatccttgttatttgtataattactatcaccattaccaac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17408 atgttgattgagatttccagcatccttgttatttgtataattactatcaccattaccaac 17467
Query: 566 tccagagttgttgtgatacgatgttgtaccatcgtcatcgtcatcatccaagttcacctc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17468 tccagagttgttgtgatacgatgttgtaccatcgtcatcgtcatcatccaagttcacctc 17527
Query: 626 cgaaatgagttgttgacggtcacgtgacgtacttagcctatccactttctgtcttcttgg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17528 cgaaatgagttgttgacggtcacgtgacgtacttagcctatccactttctgtcttcttgg 17587
Query: 686 gtcaataaccacttgcaattcgtccacctgcgtcaacttggaccgcgaaatattctctat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17588 gtcaataaccacttgcaattcgtccacctgcgtcaacttggaccgcgaaatattctctat 17647
Query: 746 catgcacacttgggaataacaacggtctgtttacccgtatgagctttcgttgaaatatat 805
||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 17648 catgcacactt-ggaataacaacggtctgtttaccgttatgagcttccgttgaaatatat 17706
Query: 806 cctttgtgggccatgtttcatttgttgaa--gctttacgat-aacgaa-tatggtcttct 861
| || ||||||||||||||| |||||||| ||| ||||| |||||| || ||||||||
Sbjct: 17707 ctttggtgggccatgtttca-ttgttgaaagccttcacgatcaacgaattagggtcttct 17765
Query: 862 aaaa-attggtaacagtc-taatggtaacctttttga-gtcgggagtcatatt 911
|||| ||||||||||||| ||||| ||||||| ||| ||||| |||||||||
Sbjct: 17766 aaaacattggtaacagtcgtaatgtcaacctttctgaggtcggaagtcatatt 17818
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6210
Number of Sequences: 1807
Number of extensions: 6210
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)