BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB11RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig928 1374 0.0
>3x_Contig928
Length = 1948
Score = 1374 bits (693), Expect = 0.0
Identities = 796/813 (97%), Gaps = 13/813 (1%)
Strand = Plus / Plus
Query: 104 atatatgtaggccggaacagattgttcttcgcaaatgtaaactaacttatgtgttaatgt 163
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct: 1 atatatgt-ggccggaacagattgttct-cgcaaatgtaa-ctaacttatgtgtta-tgt 56
Query: 164 acaaatatgaatatatttcaaatttaaatcttaataatattagttatgcttatgtccagt 223
||||||| || ||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct: 57 acaaatagga-tatatttcaaagt-aaatctgaataatattagttatgcttatgtccagt 114
Query: 224 ttggataatatggcactagttattttaaaactattcaagcttgaagtgtatatttttatg 283
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 t-ggataatatggcactagttattttaaaactattcaagcttgaagtgtatatttttatg 173
Query: 284 atattacctatacaatactttctaaatgaacagcatagtcaatagccatatccacggtat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 atattacctatacaatactttctaaatgaacagcatagtcaatagccatatccacggtat 233
Query: 344 ccccactctctatcctgtctggagttgaatcatttccaaatgtgataacgccatggttga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ccccactctctatcctgtctggagttgaatcatttccaaatgtgataacgccatggttga 293
Query: 404 cgctccagtcacgttctttagcgaacgcctccatctccttttcattctcgaagaatagta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cgctccagtcacgttctttagcgaacgcctccatctccttttcattctcgaagaatagta 353
Query: 464 gagtcttagcgttgaacaatggtaaggagctatatgcttgttcagaattcaaagcaattt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gagtcttagcgttgaacaatggtaaggagctatatgcttgttcagaattcaaagcaattt 413
Query: 524 cctctcttatagcctctttcaaagtctttgtgaaaacattgaactcttcaaccttagaac 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cctctcttatagcctctttcaaagtctttgtgaaaacattgaactcttcaaccttagaac 473
Query: 584 ctgtttgtaacagatcccaagccttttgataagaaccttccatcaaaagtctttccaact 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctgtttgtaacagatcccaagccttttgataagaaccttccatcaaaagtctttccaact 533
Query: 644 ttactggataagagaggtacgaactctcttccaaattcgtaacgtatctgctcaaaaact 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttactggataagagaggtacgaactctcttccaaattcgtaacgtatctgctcaaaaact 593
Query: 704 caaattctgagtgaagtttagtgtaatcgttttgtgctagcaagattaataagtacaaac 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 caaattctgagtgaagtttagtgtaatcgttttgtgctagcaagattaataagtacaaac 653
Query: 764 ttatcaactttgaacttgctatctgaatcactcaattctttcacatcagaaaagttagaa 823
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 654 ttatcaac-ttgaacttgctatctgaatcactcaattctttcacatcagaaaag-tagaa 711
Query: 824 tgcgccttaactgtgagttatagttcatgaaagtttcaaaatcctcacagtatattgctt 883
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 712 tgcg-cttaactgtgagtaatagttcatgaaagtttcaaaatcctcacagtata-tgctt 769
Query: 884 gaaagtgcttcctatctcaagatatcttctttg 916
|||||||| |||||||||||| |||||||||||
Sbjct: 770 gaaagtgc-tcctatctcaag-tatcttctttg 800
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7491
Number of Sequences: 1807
Number of extensions: 7491
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)