BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZB12FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 1451 0.0
>3x_Contig1515
Length = 8855
Score = 1451 bits (732), Expect = 0.0
Identities = 794/811 (97%), Gaps = 3/811 (0%)
Strand = Plus / Minus
Query: 85 atcataattcttcaaatcaactttatgttctaatgaaccttgctttcctacgaatccagc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 atcataattcttcaaatcaactttatgttctaatgaaccttgctttcctacgaatccagc 2963
Query: 145 aatatatttaatcatttccattttatccatagtactaaagtttcgtttgttgatctctac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 aatatatttaatcatttccattttatccatagtactaaagtttcgtttgttgatctctac 2903
Query: 205 tgcaaattttactggcaccatctcctctttgtggaagtgctgtggtagtactcgttcaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 tgcaaattttactggcaccatctcctctttgtggaagtgctgtggtagtactcgttcaca 2843
Query: 265 aagttttgccaattcttccatactggcatgacatgaatcggtaattggtgttagtttctg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2842 aagttttgccaattcttccatactggcatgacatgaatcggtaattggtgttagtttctg 2783
Query: 325 cacaaatcttgttcttttcctcaagtcatgtggatcggctagatctctgatgattctatg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 cacaaatcttgttcttttcctcaagtcatgtggatcggctagatctctgatgattctatg 2723
Query: 385 aacaaacttttctggaacaatcggttttcgggtcttcacaaagactagacactcagtctg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2722 aacaaacttttctggaacaatcggttttcgggtcttcacaaagactagacactcagtctg 2663
Query: 445 aaggtcgagctgctccaatattggtttgttttttttggtatcgactatggtagttttatg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2662 aaggtcgagctgctccaatattggtttgttttttttggtatcgactatggtagttttatg 2603
Query: 505 gttttttagtccttccaactcttgctgaagttcctcttcaattgaaatctctttcttcga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2602 gttttttagtccttccaactcttgctgaagttcctcttcaattgaaatctctttcttcga 2543
Query: 565 ctctgttgtgacgggttctttactttcgatttcgatggatcctgagccatcangagaggc 624
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2542 ctctgttgtgacgggttctttactttcgatttcgatggatcctgagccatcaggagaggc 2483
Query: 625 cgagttcatggcattgagctcatcagaatagtactcttctaccttttctttcaaaataga 684
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2482 cgagttcatggcattgagctcatcagaatagtactcttctaccttttcttcaaaaataga 2423
Query: 685 aagaaattcagaggcagcggccttcttttttgttcttg-acacgttatgtagattcctga 743
||||| |||||||||||||||||||| ||| |||||| |||||||||||||||||||||
Sbjct: 2422 aagaatttcagaggcagcggccttctctttgtttcttgcacacgttatgtagattcctga 2363
Query: 744 agtgttaggatctagagtgcttttgacaactttatatct-tttacgataccttctttaga 802
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct: 2362 agtgttaggatctagagtgcttttgacaactttatatctcttaacgatacctcctttaga 2303
Query: 803 atcctttttgcttctttttgccatcgggagtgattgacttcaggttgcttccgtactttg 862
||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 2302 atcttttctgcttctttttgccatcgtgagtgattgacttcaggttgcttccgtacgttg 2243
Query: 863 tt-acattagggtaacttaatgactttccat 892
|| |||||||| |||||||||||||||||||
Sbjct: 2242 ttcacattaggttaacttaatgactttccat 2212
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8225
Number of Sequences: 1807
Number of extensions: 8225
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)