BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZC01RM1.SCF screened BAC_end
(839 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig734 531 e-151
>3x_Contig734
Length = 1760
Score = 531 bits (268), Expect = e-151
Identities = 315/327 (96%), Gaps = 4/327 (1%)
Strand = Plus / Minus
Query: 39 acagtcccactgatagtctcgttcggtttc-acactctgtgcacatcatcaagtacaatt 97
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 386 acagtcccactgatagtctcgttcggtttccacactctgtgcacatcatcaagtacaatt 327
Query: 98 tcaaactccaaaatgtacgatttcataccggagtgcttgaaaatggagctcttgccagca 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaaactccaaaatgtacgatttcataccggagtgcttgaaaatggagctcttgccagca 267
Query: 158 ttgctcactgaatcgaagctactcaccacaaatgcactaggagaacctctctcagctcgt 217
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 266 ttgctcactgaatcgaagctactcaccacaaatgcactaggagaacctcgctcagctcgt 207
Query: 218 tcgttcgaccgcagaagtttatcaaataatcccatggtctaattcgactttaagctctta 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tcgttcgaccgcagaagtttatcaaataatcccatggtctaattcgactttaagctctta 147
Query: 278 tatggaagccaaaaataaacgaaaggaaccacgaaagaaaaatacaagcccggaccacca 337
|||||| ||||||||||||||||||||| ||||||||||||||||||||| | || ||
Sbjct: 146 tatggaggccaaaaataaacgaaaggaa-cacgaaagaaaaatacaagccggcac--aca 90
Query: 338 ccctaagcacatttatgtctttaaaaa 364
|||||||||| ||||||||| |||||
Sbjct: 89 acctaagcacaattatgtcttcaaaaa 63
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,022
Number of Sequences: 1807
Number of extensions: 38022
Number of successful extensions: 3512
Number of sequences better than 1.0e-20: 1
length of query: 839
length of database: 10,358,551
effective HSP length: 16
effective length of query: 823
effective length of database: 10,329,639
effective search space: 8501292897
effective search space used: 8501292897
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)