BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZC05RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1246 1612 0.0
>3x_Contig1246
Length = 5473
Score = 1612 bits (813), Expect = 0.0
Identities = 862/872 (98%), Gaps = 5/872 (0%)
Strand = Plus / Plus
Query: 44 gcttatggagacatggtaatgaaggtttttcttttgagctaattatctccatagtagatg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2595 gcttatggagacatggtaatgaaggtttttcttttgagctaattatctccatagtagatg 2654
Query: 104 ggggatatgtctagaataggtattgtcggatcaagcatttttaggggacaaactaattat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2655 ggggatatgtctagaataggtattgtcggatcaagcatttttaggggacaaactaattat 2714
Query: 164 tggaacaaagtgggtggtttattgaaccgagttgtaaaaaggaaggctatactatgggtt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2715 tggaacaaagtgggtggtttattgaaccgagttgtaaaaaggaaggctatactatgggtt 2774
Query: 224 atataatccaataatacttcacatcgcaaggggcaacggagaagcatggtactgttagta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2775 atataatccaataatacttcacatcgcaaggggcaacggagaagcatggtactgttagta 2834
Query: 284 tttgagtaaaattacgacatcactcgctgcttttttgattgcccatgaactagaacttga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2835 tttgagtaaaattacgacatcactcgctgcttttttgattgcccatgaactagaacttga 2894
Query: 344 atttacgagaacatcaattaagaatatgatgtggatcaccacgggcactaaagcatttcg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2895 atttacgagaacatcaattaagaatatgatgtggatcaccacgggcactaaagcatttcg 2954
Query: 404 taaaactttagtgggtacttacctaatcaatggcaattaatgtaagatgctatgctccag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2955 taaaactttagtgggtacttacctaatcaatggcaattaatgtaagatgctatgctccag 3014
Query: 464 caaaatcgttctcagaaggtttgctattttgaataaacctggatcagaaatcagtttata 523
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3015 caaaatcgttctcagaaggtttgctattttgaataaacctggatcaaaaatcagtttata 3074
Query: 524 aaagagcagtgttttatgaatttactttctaatccaacttgatcaaggtttgagttatac 583
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3075 aaagagcagggttttatgaatttactttctaatccaacttgatcaaggtttgagttatac 3134
Query: 584 tacactcaattatatcaattgatcacactgtccaagaaaatcaatatcaagaacatctat 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3135 tacactcaattatatcaattgatcacactgtccaagaaaatcaatatcaagaacatctat 3194
Query: 644 aatatcaaaatgtctaacattctacacaaattcgctgacaagttaaccggtgatgataac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3195 aatatcaaaatgtctaacattctacacaaattcgctgacaagttaaccggtgatgataac 3254
Query: 704 aatgaccaaagagtcgatgaacaaggaaacagattaaactctcaacaacaatctcacggt 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3255 aatgaccaaagagtcgatgaacaaggaaacagattaaactctcaacaacaatctcacggt 3314
Query: 764 cgtcaaaccgacatgggatactcaaacaaaccatctcaacaatctggaaatgggttcaat 823
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3315 cgtcaaaccgacatgggatactcaaacaaaccatctcaacaatctgg-aatgggttcaa- 3372
Query: 824 tgggtagaggnttctcagcaagaatctacangtagattcgatgatgatgaactaagtggg 883
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 3373 tgggtagagg-ttctcagcaagaatctacaggtagattcgatgatgatgaactaagt-gg 3430
Query: 884 tggacgtcaaaaccagattcaagaattagatg 915
|||||||| ||||||||| ||||||| |||||
Sbjct: 3431 tggacgtc-aaaccagatccaagaataagatg 3461
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7760
Number of Sequences: 1807
Number of extensions: 7760
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)