BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZC07FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1027 0.0
>3x_Contig1698
Length = 21001
Score = 1027 bits (518), Expect = 0.0
Identities = 564/574 (98%), Gaps = 4/574 (0%)
Strand = Plus / Minus
Query: 85 tcaatctacaacactgaacgatacaagtttgacagttgcaattcgttagtaggtcttatt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7048 tcaatctacaacactgaacgatacaagtttgacagttgcaattcgttagtaggtcttatt 6989
Query: 145 cattttcctgttaactgttatttaattattattatttaatattgcatttcatattgctcc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6988 cattttcctgttaactgttatttaattattattatttaatattgcatttcatattgctcc 6929
Query: 205 ttttatttgggctttacggtatctcttttaacattttacaaccacaacttcacccttttc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6928 ttttatttgggctttacggtatctcttttaacattttacaaccacaacttcacccttttc 6869
Query: 265 cagattataatcatgtctctagctaaatccgccgctaacaaattagactgggctaaggtc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6868 cagattataatcatgtctctagctaaatccgccgctaacaaattagactgggctaaggtc 6809
Query: 325 atttcttctttgaaattgactggtaagactgccacccaattgtcctctttcaagaagaga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6808 atttcttctttgaaattgactggtaagactgccacccaattgtcctctttcaagaagaga 6749
Query: 385 aacgatgaagcccgtagacagttattggaattgcaaagtcaacctacgtctgttgatttc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6748 aacgatgaagcccgtagacagttattggaattgcaaagtcaacctacgtctgttgatttc 6689
Query: 445 tcccattacagatctgtcttgaagaacaccgaagtcgtcgataagattgaacaattctac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6688 tcccattacagatctgtcttgaagaacaccgaagtcgtcgataagattgaacaattctac 6629
Query: 505 aaatcttacaagccagtcttcgttgatgtcttcaagcaactgtctaccattgaagccttt 564
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6628 aaatcttacaagccagtctccgttgatgtctccaagcaactgtctaccattgaagccttt 6569
Query: 565 gaatcttcagcccattgaaaatgctgctgagactgaaaaagttggtcgctcaagaattga 624
||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6568 gaatc-tcaagccattgaaaatgctgctgagactg-aaaagttggtcgctcaagaattga 6511
Query: 625 aagaccttgaa-gaaactttgaacaacattgaat 657
| || |||||| ||||||||||||||||| ||||
Sbjct: 6510 agga-cttgaaggaaactttgaacaacatcgaat 6478
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,957
Number of Sequences: 1807
Number of extensions: 40957
Number of successful extensions: 6298
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)