BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZC08FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 1259 0.0
>3x_Contig1676
Length = 15800
Score = 1259 bits (635), Expect = 0.0
Identities = 739/765 (96%), Gaps = 8/765 (1%)
Strand = Plus / Minus
Query: 85 ataaattgcagaggagatagtttgaaaacttcagaaactgtctgagggaattgtagttca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5465 ataaattgcagaggagatagtttgaaaacttcagaaactgtctgagggaattgtagttca 5406
Query: 145 ttcgagtctaacaattcgatatttccttccgtatctttcgtgatacttctgaaggtaaca 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405 ttcgagtctaacaattcgatatttccttccgtatctttcgtgatacttctgaaggtaaca 5346
Query: 205 gtagaagctttcttcatagccttttcagctttgacattttgagcctttctttctaaattc 264
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5345 gtagaagctttcttcagagccttttcagctttgacattttgagcctttctttctaaattc 5286
Query: 265 atcatatccttccacacagtgtttctttcccacacaacgtgttctctcaaatgaagggaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5285 atcatatccttccacacagtgtttctttcccacacaacgtgttctctcaaatgaagggaa 5226
Query: 325 agctctctttcagcttcttggaagttaaagacctcatgttgagggtccattaatccaata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5225 agctctctttcagcttcttggaagttaaagacctcatgttgagggtccattaatccaata 5166
Query: 385 gcttttgcatacatgactatgacttcattgatgtcattagataaattctcaatggtgtgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5165 gcttttgcatacatgactatgacttcattgatgtcattagataaattctcaatggtgtgt 5106
Query: 445 tcattgaacacatgcgatttctttgataaactctttaaataatcggtcttgatattacta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5105 tcattgaacacatgcgatttctttgataaactctttaaataatcggtcttgatattacta 5046
Query: 505 tccaaagatttatcgaattttttgcagatcttggcaaaaccagtttgattcaactcgant 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5045 tccaaagatttatcgaattttttgcagatcttggcaaaaccagtttgattcaactcgata 4986
Query: 565 aaagattttatttctgaaagttgagtgaaacaggcaacgattctcttcttcaaagt-atc 623
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4985 aaagattttaattctgaaagttgagtgaaacaggcaacgattctcttcttcaaagtaatc 4926
Query: 624 tgttgttccataataggatcagtagtggtgaaatcagttaccctggacagcgttggaagt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4925 tgttgttccataataggatcagtagtggtgaaatcagttaccctggacagcgttggaagt 4866
Query: 684 atttcactggtaatgaaatgcatgagcctagattctactgaaccagtttttgctcttcga 743
||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 4865 atttcactggtaatggaatgcatgagcctagatcctactgaaccagttcgtattcttcga 4806
Query: 744 gccctggatctgctttattctgaacataagactgcttcttggtttccaattggaaaaacc 803
| ||||||||||| ||||||||| ||| ||||||| |||||||||||||| | ||||||
Sbjct: 4805 g-cctggatctgc-ttattctgaccatcagactgc-tcttggtttccaat--ggaaaacc 4751
Query: 804 cgtcctcggtaattgttttccttaaaataaagaatccatttctgg 848
||||||| || || || ||||| | ||||||| ||||||||||||
Sbjct: 4750 cgtcctc-gtcatcgtcttcctcagaataaag-atccatttctgg 4708
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8166
Number of Sequences: 1807
Number of extensions: 8166
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)