BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZC08RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1741 785 0.0
3x_Contig1545 704 0.0
>3x_Contig1741
Length = 21706
Score = 785 bits (396), Expect = 0.0
Identities = 476/495 (96%), Gaps = 6/495 (1%)
Strand = Plus / Minus
Query: 384 cagaattcccagtgttgagagatcgtatgaaggaaatcctttcgaacgctgaagaacttg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21706 cagaattcccagtgttgagagatcgtatgaaggaaatcctttcgaacgctgaagaacttg 21647
Query: 444 aacaagttgtccaattggtcggtaaatctgctttatccgatggtgataagattaccttag 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21646 aacaagttgtccaattggtcggtaaatctgctttatccgatggtgataagattaccttag 21587
Query: 504 atattgcttctttgatcaaagaagatttcttacaacaaaatggttactctacctacgatg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21586 atattgcttctttgatcaaagaagatttcttacaacaaaatggttactctacctacgatg 21527
Query: 564 cattctgtccaatttggaagacttatgatatgatgaaatcattcatctcttaccacgatg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21526 cattctgtccaatttggaagacttatgatatgatgaaatcattcatctcttaccacgatg 21467
Query: 624 aagctcaaaaatctgtatcatacggtgctaactgggcaaagctatctggagcaacgcgtg 683
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 21466 aagctcaaaaatctgtatcaaacggtgctaactgggcaaagctatctgaagcaacgcgtg 21407
Query: 684 atgtcaagcatgctgtctcttcatcgaaattttttgaaccagtttnaggtgaagaagaag 743
||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct: 21406 atgtcaagcatgctgtctcttcatcgaaattttttgaaccaagtagaggtgaagaggaag 21347
Query: 744 ttcatgcagaattcgagaaattgtggaccaattttcaagatagaattgctgaatcaaccg 803
|||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct: 21346 ttcatgcagaattcgagaaattgttgaccaatattcaagatagatttgctgaatcaaccg 21287
Query: 804 cattgatcaaaccctaggtaaatttttttattggttccgaccggacccccatcctttact 863
|||||||||| |||| ||||||||| ||| |||||||||||| | |||||||| |||||
Sbjct: 21286 -attgatcaaa-cctaagtaaattttctta-tggttccgaccgca-ccccatcc-ttact 21232
Query: 864 ttgtgttcacctttt 878
|||| ||||||||||
Sbjct: 21231 ttgt-ttcacctttt 21218
>3x_Contig1545
Length = 12118
Score = 704 bits (355), Expect = 0.0
Identities = 362/363 (99%), Gaps = 1/363 (0%)
Strand = Plus / Plus
Query: 48 tgagagaaatttcaggtcgtttaggtgaaatgcctgctgatcaaggtttcccagcatact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11751 tgagagaaatttcaggtcgtttaggtgaaatgcctgctgatcaaggtttcccagcatact 11810
Query: 108 tgggtgctaagttggcctc-cttttacgaaagagctggtaaggctgttgctttaggttct 166
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11811 tgggtgctaagttggcctcgcttttacgaaagagctggtaaggctgttgctttaggttct 11870
Query: 167 ccagaccgtattggttccgtttctattgttgccgctgtttccccagccggtggtgatttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11871 ccagaccgtattggttccgtttctattgttgccgctgtttccccagccggtggtgatttc 11930
Query: 227 tccgatcctgttactacatcaactcttggtatcactcaagtgttttggggtttggacaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11931 tccgatcctgttactacatcaactcttggtatcactcaagtgttttggggtttggacaaa 11990
Query: 287 aagttggctcaaagaaagcatttcccatccatcaatacttctgtttcttattccaaatat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11991 aagttggctcaaagaaagcatttcccatccatcaatacttctgtttcttattccaaatat 12050
Query: 347 acaaatgtcttgaacaaatactacgaaaagaactatccagaattcccagtgttgagagat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12051 acaaatgtcttgaacaaatactacgaaaagaactatccagaattcccagtgttgagagat 12110
Query: 407 cgt 409
|||
Sbjct: 12111 cgt 12113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7622
Number of Sequences: 1807
Number of extensions: 7622
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)