BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZC11FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig688 1471 0.0
>3x_Contig688
Length = 2555
Score = 1471 bits (742), Expect = 0.0
Identities = 806/824 (97%), Gaps = 3/824 (0%)
Strand = Plus / Minus
Query: 87 caatgtctctgacaacgataccggtacatttacacctttagaatcatatttactgtcaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 caatgtctctgacaacgataccggtacatttacacctttagaatcatatttactgtcaat 877
Query: 147 gttattcaattggacaaccggcctttcactatcgaaagccactactgcatcttttagcac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gttattcaattggacaaccggcctttcactatcgaaagccactactgcatcttttagcac 817
Query: 207 aatttcagttgcaatacagtactgaacaaacgtcaatgcactgagtattaagctttgaac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 aatttcagttgcaatacagtactgaacaaacgtcaatgcactgagtattaagctttgaac 757
Query: 267 tctcatttcttctcttcgttatatttataccttaaacgaattcctaggaagtcaattacg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tctcatttcttctcttcgttatatttataccttaaacgaattcctaggaagtcaattacg 697
Query: 327 caatgatcacttctaatcaatcaatggcaaaaattaataaaaccagtgctataacaaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caatgatcacttctaatcaatcaatggcaaaaattaataaaaccagtgctataacaaaca 637
Query: 387 aaatgggaaatatcacagatattcgaacaactgtaacaactttaactttacttaattcgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aaatgggaaatatcacagatattcgaacaactgtaacaactttaactttacttaattcgg 577
Query: 447 tggtgttttctcttcgtgttctattcctattctaaaattgtacgtttgttaattgtgttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tggtgttttctcttcgtgttctattcctattctaaaattgtacgtttgttaattgtgttt 517
Query: 507 ttctcttgaatatcagatatactattttagtatgtgaattttattattagtgtagctaca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttctcttgaatatcagatatactattttagtatgtgaattttattattagtgtagctaca 457
Query: 567 aaataaaaaaaaatgttgtggaatcagcttacccggatacgttgagaaggctgaccctgc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaataaaaaaaaatgttgtggaatcagcttacccggatacgttgagaaggctgaccctgc 397
Query: 627 ctcctgatgacactgacgatgaccaatttcaagtgctatccaataaggactcctcaatgg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctcctgatgacactgacgatgaccaatttcaagtgctatccaataaggactcctcaatgg 337
Query: 687 attgtaatgggattgtagaccctanagtctgggaaggtgctgcttgctcctgttgtgtga 746
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 336 attgtaatgggattgtagaccctaaagtctgggaaggtgctgcttgctcctgttgtgtga 277
Query: 747 ataattcgtcaccctgctgttgagctttcacttttttcttctcttttgcaggctggnttg 806
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 276 ataattcgtcaccctgctgttgagctttcacttttttctcctcttttgcaggctggtttg 217
Query: 807 atggcaactgggtcgatcatgcctttttactgtccttggtagaatatatcgaatttatcg 866
||||||||| |||||||||||||| || |||||||||| || |||| ||||| |||||
Sbjct: 216 atggcaact-ggtcgatcatgcctcttaactgtccttgtaggagtataacgaatctatcg 158
Query: 867 taaaag-acaaaccattttctaacga-gtaccgtttgcgaatga 908
|||||| |||||||| |||| ||||| |||| | ||||||||||
Sbjct: 157 taaaagaacaaaccaatttcaaacgaggtacggcttgcgaatga 114
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7968
Number of Sequences: 1807
Number of extensions: 7968
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)