BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC47ZC11RM1.SCF screened BAC_end (919 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1603 1616 0.0 >3x_Contig1603 Length = 12146 Score = 1616 bits (815), Expect = 0.0 Identities = 850/860 (98%), Gaps = 2/860 (0%) Strand = Plus / Minus Query: 51 atgaaaatctaaaaagtttgtccactgacatagctaagaaagaaaaagagatagtagaat 110 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3998 atgaaaatctaaaaagtttgtccactgacatagctaagaaagacaaagagatagtagaat 3939 Query: 111 cacgccacgtaacagatcatttgaaaactcagcgctatgagcttgggaaaagttctcgac 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3938 cacgccacgtaacagatcatttgaaaactcagcgctatgagcttgggaaaagttctcgac 3879 Query: 171 tcttgcagcaatatgatgtcaagatcagtagatatcgccagaaagtcaacgacaacaatg 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3878 tcttgcagcaatatgatgtcaagatcagtagatatcgccagaaagtcaacgacaacaatg 3819 Query: 231 aaaagctaagagtagatataagagacagcataaaagaagccagtaacaagttacaagagg 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3818 aaaagctaagagtagatataagagacagcataaaagaagccagtaacaagttacaagagg 3759 Query: 291 cacgcgagagcgagaggaaagctttacttcgtttacaccccataaccatacagatgcaag 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3758 cacgcgagagcgagaggaaagctttacttcgtttacaccccataaccatacagatgcaag 3699 Query: 351 aatttgatatcgagatggcgacaaagaatatgtatctcctggaattacgtacgaaaattg 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3698 aatttgatatcgagatggcgacaaagaatatgtatctcctggaattacgtacgaaaattg 3639 Query: 411 attccatatcacaggtgtgcaggtctatggaagaagcgcgcaatttgaaaaaagaagagt 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3638 attccatatcacaggtgtgcaggtctatggaagaagcgcgcaatttgaaaaaagaagagt 3579 Query: 471 tcatcgatgtttctgagcaatacaaaagtatcaaaaacacagatgagtttataaagtgct 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3578 tcatcgatgtttctgagcaatacaaaagtatcaaaaacacagatgagtttataaagtgct 3519 Query: 531 cgaatgcaatcgagaacttcccagaagaggaaaaggatgttctcaacgaaattgcggtaa 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3518 cgaatgcaatcgagaacttcccagaagaggaaaaggatgttctcaacgaaattgcggtaa 3459 Query: 591 aatataatcaagaaaatcaattcagctcgattcatatcgaaagtattataaataggcttt 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3458 aatataatcaagaaaatcaattcagctcgattcatatcgaaagtattataaataggcttt 3399 Query: 651 caagtgaactctctatgatcaacaacgacacttctgtcattgacattctaaaaaaaacca 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3398 caagtgaactctctatgatcaacaacgacacttctgtcattgacattctaaaaaaaacca 3339 Query: 711 acgaagatatatctatactggagaaaactcttcctcatctacgagccaagctcgcatcta 770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3338 acgaagatatatctatactggagaaaactcttcctcatctacgagccaagctcgcatcta 3279 Query: 771 atgctcannacatacttgaaataagaaactncctagagcctaggtttggatgatattngt 830 ||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| || Sbjct: 3278 atgctcaaacaatacttgaaataagaaactccctagagcctagg-ttggatgatatt-gt 3221 Query: 831 gaaacagatctctaagaaattctcccatcttttcgcatatgttgggagcgcccgtcaagt 890 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 3220 gaaacagatctctaagaaattctcccatcttttcgcatatgttgggagcgccggtcaagt 3161 Query: 891 ggatttgaagaaacctgact 910 ||| |||||||||||||||| Sbjct: 3160 ggagttgaagaaacctgact 3141 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7440 Number of Sequences: 1807 Number of extensions: 7440 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 919 length of database: 10,358,551 effective HSP length: 16 effective length of query: 903 effective length of database: 10,329,639 effective search space: 9327664017 effective search space used: 9327664017 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)