BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZC11RM1.SCF screened BAC_end
         (919 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1603                                                        1616   0.0  

>3x_Contig1603 
          Length = 12146

 Score = 1616 bits (815), Expect = 0.0
 Identities = 850/860 (98%), Gaps = 2/860 (0%)
 Strand = Plus / Minus

                                                                        
Query: 51   atgaaaatctaaaaagtttgtccactgacatagctaagaaagaaaaagagatagtagaat 110
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3998 atgaaaatctaaaaagtttgtccactgacatagctaagaaagacaaagagatagtagaat 3939

                                                                        
Query: 111  cacgccacgtaacagatcatttgaaaactcagcgctatgagcttgggaaaagttctcgac 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3938 cacgccacgtaacagatcatttgaaaactcagcgctatgagcttgggaaaagttctcgac 3879

                                                                        
Query: 171  tcttgcagcaatatgatgtcaagatcagtagatatcgccagaaagtcaacgacaacaatg 230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3878 tcttgcagcaatatgatgtcaagatcagtagatatcgccagaaagtcaacgacaacaatg 3819

                                                                        
Query: 231  aaaagctaagagtagatataagagacagcataaaagaagccagtaacaagttacaagagg 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 aaaagctaagagtagatataagagacagcataaaagaagccagtaacaagttacaagagg 3759

                                                                        
Query: 291  cacgcgagagcgagaggaaagctttacttcgtttacaccccataaccatacagatgcaag 350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 cacgcgagagcgagaggaaagctttacttcgtttacaccccataaccatacagatgcaag 3699

                                                                        
Query: 351  aatttgatatcgagatggcgacaaagaatatgtatctcctggaattacgtacgaaaattg 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 aatttgatatcgagatggcgacaaagaatatgtatctcctggaattacgtacgaaaattg 3639

                                                                        
Query: 411  attccatatcacaggtgtgcaggtctatggaagaagcgcgcaatttgaaaaaagaagagt 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 attccatatcacaggtgtgcaggtctatggaagaagcgcgcaatttgaaaaaagaagagt 3579

                                                                        
Query: 471  tcatcgatgtttctgagcaatacaaaagtatcaaaaacacagatgagtttataaagtgct 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3578 tcatcgatgtttctgagcaatacaaaagtatcaaaaacacagatgagtttataaagtgct 3519

                                                                        
Query: 531  cgaatgcaatcgagaacttcccagaagaggaaaaggatgttctcaacgaaattgcggtaa 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3518 cgaatgcaatcgagaacttcccagaagaggaaaaggatgttctcaacgaaattgcggtaa 3459

                                                                        
Query: 591  aatataatcaagaaaatcaattcagctcgattcatatcgaaagtattataaataggcttt 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3458 aatataatcaagaaaatcaattcagctcgattcatatcgaaagtattataaataggcttt 3399

                                                                        
Query: 651  caagtgaactctctatgatcaacaacgacacttctgtcattgacattctaaaaaaaacca 710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398 caagtgaactctctatgatcaacaacgacacttctgtcattgacattctaaaaaaaacca 3339

                                                                        
Query: 711  acgaagatatatctatactggagaaaactcttcctcatctacgagccaagctcgcatcta 770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3338 acgaagatatatctatactggagaaaactcttcctcatctacgagccaagctcgcatcta 3279

                                                                        
Query: 771  atgctcannacatacttgaaataagaaactncctagagcctaggtttggatgatattngt 830
            |||||||    ||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct: 3278 atgctcaaacaatacttgaaataagaaactccctagagcctagg-ttggatgatatt-gt 3221

                                                                        
Query: 831  gaaacagatctctaagaaattctcccatcttttcgcatatgttgggagcgcccgtcaagt 890
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3220 gaaacagatctctaagaaattctcccatcttttcgcatatgttgggagcgccggtcaagt 3161

                                
Query: 891  ggatttgaagaaacctgact 910
            ||| ||||||||||||||||
Sbjct: 3160 ggagttgaagaaacctgact 3141


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7440
Number of Sequences: 1807
Number of extensions: 7440
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)