BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD01FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1304 0.0
>3x_Contig1763
Length = 22654
Score = 1304 bits (658), Expect = 0.0
Identities = 699/708 (98%), Gaps = 4/708 (0%)
Strand = Plus / Minus
Query: 85 atgacataaaacctaacacactctttgagaccattcttgaggccctg-ttctagtaattg 143
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 922 atgacataaaacctaacacactctttgagaccattcttgaggccctgcttctagtaattg 863
Query: 144 ctgtcccttttccttgataaactttactttgtcacaggatttgaatgattcgatagtatt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ctgtcccttttccttgataaactttactttgtcacaggatttgaatgattcgatagtatt 803
Query: 204 aaaattcaacactgaccctttcaaagtcactgcctcattattgagaacaggatcgaaact 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aaaattcaacactgaccctttcaaagtcactgcctcattattgagaacaggatcgaaact 743
Query: 264 gtcatctctaagcgagagtgaaacagtgttagaagtgatattttcaaggtctagtgcaga 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gtcatctctaagcgagagtgaaacagtgttagaagtgatattttcaaggtctagtgcaga 683
Query: 324 gaacaattctttctcagcagagtctaacttgaacacttcaagttttaatcttgataattc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaacaattctttctcagcagagtctaacttgaacacttcaagttttaatcttgataattc 623
Query: 384 atggaaaaacgaggtatcaacaaaagacttaaaagctggtgaaaacttaagatcgttaag 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atggaaaaacgaggtatcaacaaaagacttaaaagctggtgaaaacttaagatcgttaag 563
Query: 444 catctttcctggtactcaggttttgttccatgaagaaagaatagtacttcttggtttact 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 catctttcctggtactcaggttttgttccatgaagaaagaatagtacttcttggtttact 503
Query: 504 ttatttatctatgcactgcagttaagggtatagtgtatcagggtagtattacgaatcgac 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttatttatctatgcactgcagttaagggtatagtgtatcagggtagtattacgaatcgac 443
Query: 564 gtcttttttacaagaatgaactaaactcangaaagcattgttaccctgaaacatgccaat 623
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 442 gtcttttttacaagaatgaactaaactcaggaaagcattgttaccctgaaacatgccaat 383
Query: 624 tattaatattcactagtgtacactatacaagacngccattgtatcattgatctaatgcag 683
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 382 tattaatattcactagtgtacactatacaagacggccattgtatcattgatctaatgcag 323
Query: 684 atgatgagtaaattcaactaacttgcctatctcgtaaatatatattgtaaattattgccc 743
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 322 atgatgagtaaattcaactaacttgcctatctcgtaaatatatattgt-aattattgtcc 264
Query: 744 aaacaagaagagacttaacccaaattctattgcattttcttcaccttg 791
|||||||||||||| ||| ||||||||||| ||| |||||||||||||
Sbjct: 263 aaacaagaagagac-taaaccaaattctatagca-tttcttcaccttg 218
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7447
Number of Sequences: 1807
Number of extensions: 7447
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)