BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD02RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1553 1622 0.0
>3x_Contig1553
Length = 8593
Score = 1622 bits (818), Expect = 0.0
Identities = 849/857 (99%), Gaps = 2/857 (0%)
Strand = Plus / Minus
Query: 47 ggtaataaatatttcttatgctgatctggaatagagttgataatatccgtcaaccttggt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 ggtaataaatatttcttatgctgatctggaatagagttgataatatccgtcaaccttggt 1065
Query: 107 tgttgcttcaacttgtaccttttagagtaccttgtaatcaatccattcaaattgacctcc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 tgttgcttcaacttgtaccttttagagtaccttgtaatcaatccattcaaattgacctcc 1005
Query: 167 ttgctggaaccaccagttaaagaactgatcaactcaatagtaatatcggaacaacattgc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 ttgctggaaccaccagttaaagaactgatcaactcaatagtaatatcggaacaacattgc 945
Query: 227 aagaaccgttccttctctggagctagcttttgtttattattctttggacccttacctttg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 aagaaccgttccttctctggagctagcttttgtttattattctttggacccttacctttg 885
Query: 287 cgacccattacttatcgatttatcctagtttcctccgtgaaatacttctgttcacagttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 cgacccattacttatcgatttatcctagtttcctccgtgaaatacttctgttcacagttg 825
Query: 347 aaccaaactagccgaccaactgtttccaaatattcaaagtacagagcactacaagttaac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aaccaaactagccgaccaactgtttccaaatattcaaagtacagagcactacaagttaac 765
Query: 407 cgagcccactcagagttacagctaaaactcatctcatctcatcccatcacatctcatcgc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cgagcccactcagagttacagctaaaactcatctcatctcatcccatcacatctcatcgc 705
Query: 467 tggaagatgattttttttatcgaatttcagtctttttttcttttaccgtcatagtaaacc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tggaagatgattttttttatcgaatttcagtctttttttcttttaccgtcatagtaaacc 645
Query: 527 gttagccatttagtatcttggccaagctgttaagaaaattaattgtccgggtaattaaat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gttagccatttagtatcttggccaagctgttaagaaaattaattgtccgggtaattaaat 585
Query: 587 atccgtaccacatgaccttgaataaactgtctttccctctcgtgtttacagtatgattcc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atccgtaccacatgaccttgaataaactgtctttccctctcgtgtttacagtatgattcc 525
Query: 647 aaagatttgaatatgcaaacggcagattaataaatactgaacaaatcacatcgtaaatag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaagatttgaatatgcaaacggcagattaataaatactgaacaaatcacatcgtaaatag 465
Query: 707 aacggaaacagaaagaaaaaaagggcaagaatagacgttctacagcacttggaaatcagg 766
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 464 aacggaaacagaaagaaaaaaaggcaaagaatagacgttctacagcacttggaaatcagg 405
Query: 767 cgttaacgaccagttactaaattcactggtgctcttattgtgtaccagntttatctattt 826
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 404 cgttaacgaccagttactaaattcactggtgctcttattgtgtaccagttttatctattt 345
Query: 827 tcttttttctgatcggggattgttatagcttgttgagaagaagaag-taaagcagttat- 884
||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 344 tcttttttctgatcgggaattgtaatagcttgttgagaagaagaagttaaagcagttatg 285
Query: 885 ggcccagacgcttagaa 901
|||||||||||| ||||
Sbjct: 284 ggcccagacgctaagaa 268
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9628
Number of Sequences: 1807
Number of extensions: 9628
Number of successful extensions: 374
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)