BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC47ZD04FM1.SCF screened BAC_end (929 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1623 1275 0.0 >3x_Contig1623 Length = 14379 Score = 1275 bits (643), Expect = 0.0 Identities = 683/691 (98%), Gaps = 4/691 (0%) Strand = Plus / Plus Query: 86 tccatttgcaggtgcgaatttccaaagagatgggccaatgtgtatgttcaacttcaagga 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11505 tccatttgcaggtgcgaatttccaaagagatgggccaatgtgtatgttcaacttcaagga 11564 Query: 146 ccaaccaaactatatcgcttcttccggtaaaaaccttgttcagttcaacacattggatga 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11565 ccaaccaaactatatcgcttcttccggtaaaaaccttgttcagttcaacacattggatga 11624 Query: 206 caacaatgccaagtcaacgcacgaaagatttactggtgttgtattagaagaggatgttgt 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11625 caacaatgccaagtcaacgcacgaaagatttactggtgttgtattagaagaggatgttgt 11684 Query: 266 cgctgaaataaagagacaagaagaaaaccgtgtagaacatgaacgtgttgttaacggtaa 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11685 cgctgaaataaagagacaagaagaaaaccgtgtagaacatgaacgtgttgttaacggtaa 11744 Query: 326 gatcaacgaatattatattgtcaatggtgcatctccagtcgatttggaacaaccaagagc 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11745 gatcaacgaatattatattgtcaatggtgcatctccagtcgatttggaacaaccaagagc 11804 Query: 386 tctatacgaaaaggtgtacaacgacaaggataagaagacattcgtcaaaaacgttgttgc 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11805 tctatacgaaaaggtgtacaacgacaaggataagaagacattcgtcaaaaacgttgttgc 11864 Query: 446 acatgcttctaagatctccaatccggaaattaagactcgtgtgtctcaatacttcggtct 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11865 acatgcttctaagatctccaatccggaaattaagactcgtgtgtctcaatacttcggtct 11924 Query: 506 tttgaatgaagatttgggtaaacagatcgctgaaggccttgaaatccaatgggagccagt 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11925 tttgaatgaagatttgggtaaacagatcgctgaaggccttgaaatccaatgggagccagt 11984 Query: 566 ttctttcgaaacatatgcccggagaatcagtatcgccagtgctttct-agacgatattag 624 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 11985 ttctttcgaaacatatgcccggagaatcagtatcgccagtgctttctaagacgatattag 12044 Query: 625 gaaattgttcaaagtgtatgtcaacaactgtttccataatttgatgagatgctctgcgag 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12045 gaaattgttcaaagtgtatgtcaacaactgtttccataatttgatgagatgctctgcgag 12104 Query: 685 ttttctttacgattgaagacataatatttattaactctattttagaaaaggattattttc 744 ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| || Sbjct: 12105 ttttcttaacgattgaagacataatatttattaactcta-tttagaaaagga-tatattt 12162 Query: 745 ttcatttatgtaaggaaaaaattaatgtaca 775 |||||||||||||| ||||||||||||||| Sbjct: 12163 ctcatttatgtaagg-aaaaattaatgtaca 12192 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7172 Number of Sequences: 1807 Number of extensions: 7172 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 929 length of database: 10,358,551 effective HSP length: 16 effective length of query: 913 effective length of database: 10,329,639 effective search space: 9430960407 effective search space used: 9430960407 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)