BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZD04FM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1623                                                        1275   0.0  

>3x_Contig1623 
          Length = 14379

 Score = 1275 bits (643), Expect = 0.0
 Identities = 683/691 (98%), Gaps = 4/691 (0%)
 Strand = Plus / Plus

                                                                         
Query: 86    tccatttgcaggtgcgaatttccaaagagatgggccaatgtgtatgttcaacttcaagga 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11505 tccatttgcaggtgcgaatttccaaagagatgggccaatgtgtatgttcaacttcaagga 11564

                                                                         
Query: 146   ccaaccaaactatatcgcttcttccggtaaaaaccttgttcagttcaacacattggatga 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11565 ccaaccaaactatatcgcttcttccggtaaaaaccttgttcagttcaacacattggatga 11624

                                                                         
Query: 206   caacaatgccaagtcaacgcacgaaagatttactggtgttgtattagaagaggatgttgt 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11625 caacaatgccaagtcaacgcacgaaagatttactggtgttgtattagaagaggatgttgt 11684

                                                                         
Query: 266   cgctgaaataaagagacaagaagaaaaccgtgtagaacatgaacgtgttgttaacggtaa 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11685 cgctgaaataaagagacaagaagaaaaccgtgtagaacatgaacgtgttgttaacggtaa 11744

                                                                         
Query: 326   gatcaacgaatattatattgtcaatggtgcatctccagtcgatttggaacaaccaagagc 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11745 gatcaacgaatattatattgtcaatggtgcatctccagtcgatttggaacaaccaagagc 11804

                                                                         
Query: 386   tctatacgaaaaggtgtacaacgacaaggataagaagacattcgtcaaaaacgttgttgc 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11805 tctatacgaaaaggtgtacaacgacaaggataagaagacattcgtcaaaaacgttgttgc 11864

                                                                         
Query: 446   acatgcttctaagatctccaatccggaaattaagactcgtgtgtctcaatacttcggtct 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11865 acatgcttctaagatctccaatccggaaattaagactcgtgtgtctcaatacttcggtct 11924

                                                                         
Query: 506   tttgaatgaagatttgggtaaacagatcgctgaaggccttgaaatccaatgggagccagt 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11925 tttgaatgaagatttgggtaaacagatcgctgaaggccttgaaatccaatgggagccagt 11984

                                                                         
Query: 566   ttctttcgaaacatatgcccggagaatcagtatcgccagtgctttct-agacgatattag 624
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11985 ttctttcgaaacatatgcccggagaatcagtatcgccagtgctttctaagacgatattag 12044

                                                                         
Query: 625   gaaattgttcaaagtgtatgtcaacaactgtttccataatttgatgagatgctctgcgag 684
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12045 gaaattgttcaaagtgtatgtcaacaactgtttccataatttgatgagatgctctgcgag 12104

                                                                         
Query: 685   ttttctttacgattgaagacataatatttattaactctattttagaaaaggattattttc 744
             ||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| || 
Sbjct: 12105 ttttcttaacgattgaagacataatatttattaactcta-tttagaaaagga-tatattt 12162

                                            
Query: 745   ttcatttatgtaaggaaaaaattaatgtaca 775
              |||||||||||||| |||||||||||||||
Sbjct: 12163 ctcatttatgtaagg-aaaaattaatgtaca 12192


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7172
Number of Sequences: 1807
Number of extensions: 7172
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)