BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC47ZD04RM1.SCF screened BAC_end
         (895 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig837                                                         1610   0.0  

>3x_Contig837 
          Length = 3290

 Score = 1610 bits (812), Expect = 0.0
 Identities = 838/845 (99%), Gaps = 2/845 (0%)
 Strand = Plus / Minus

                                                                        
Query: 45   ttatttagtagcggcactgaaatacgttctcttccatcttcactggaaggcagtttccaa 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1916 ttatttagtagcggcactgaaatacgttctcttccatcttcactggaaggcagtttccaa 1857

                                                                        
Query: 105  gtgaaaattaccattctcatccttggcgaacactcctttctcagttataataccatcgat 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1856 gtgaaaattaccattctcatccttggcgaacactcctttctcagttataataccatcgat 1797

                                                                        
Query: 165  gtgagtatatggagtgatatcaaatgatggattccatactggcatatctaaaggtgtaat 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1796 gtgagtatatggagtgatatcaaatgatggattccatactggcatatctaaaggtgtaat 1737

                                                                        
Query: 225  tccaactttggccttcacgggagtcttggattcgttcaataccggagttgggtcagttcc 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1736 tccaactttggccttcacgggagtcttggattcgttcaataccggagttgggtcagttcc 1677

                                                                        
Query: 285  gtcgattagagtaccttgaacaaatctgaactcatttggaggtctttcctcaaccactat 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 gtcgattagagtaccttgaacaaatctgaactcatttggaggtctttcctcaaccactat 1617

                                                                        
Query: 345  cttgtccccagtttctgtattgctatcaaaagtagtagttggtgcgacaacgtaaaactt 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 cttgtccccagtttctgtattgctatcaaaagtagtagttggtgcgacaacgtaaaactt 1557

                                                                        
Query: 405  gatcccaaagtgtctacagacgattgacaattggtaagtaccaatcttattggccgtgtc 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1556 gatcccaaagtgtctacagacgattgacaattggtaagtaccaatcttattggccgtgtc 1497

                                                                        
Query: 465  accattcttaactattctatcagcaccaacgaatgcagctttgataggtatctttgatgt 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 accattcttaactattctatcagcaccaacgaatgcagctttgataggtatctttgatgt 1437

                                                                        
Query: 525  ggatactaggtatgaaatggatgagtctgtaatcaacgtggatggaatttcatcatgtaa 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 ggatactaggtatgaaatggatgagtctgtaatcaacgtggatggaatttcatcatgtaa 1377

                                                                        
Query: 585  caattcgtatgcagttaagcgggatccctggttgtaaggacgtgtttccaatgggaatac 644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 caattcgtatgcagttaagcgggatccctggttgtaaggacgtgtttccaatgggaatac 1317

                                                                        
Query: 645  acgaaccattttggcattcgaagtcttcgtcctctttggttgttcatccccgctgatttg 704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 acgaaccattttggcattcgaagtcttcgtcctctttggttgttcatccccgctgatttg 1257

                                                                        
Query: 705  cttctttgttctctcatataaagatctgatnacacctaacgctgtgccataccctngagt 764
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||   ||
Sbjct: 1256 cttctttgttctctcatataaagatctgataacacctaacgctgtgccataccctgaggt 1197

                                                                        
Query: 765  agcaagtgaacctgtattgcanatcgtcaagactccaaaatctccttcgaaagcttcttt 824
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 agcaagtgaacctgtattgcaaatcgtcaagactccaaaatctccttcgaaagcttcttt 1137

                                                                        
Query: 825  ttccaactgccgct-acaaatgcttggcaccgttttctcccattgtgaaattgtctgcat 883
            ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 ttccaactg-cgctaacaaatgcttggcaccgttttctcccattgtgaaattgtctgcat 1078

                 
Query: 884  aatcg 888
            |||||
Sbjct: 1077 aatcg 1073


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5674
Number of Sequences: 1807
Number of extensions: 5674
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)