BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD05FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 1413 0.0
3x_Contig178 833 0.0
3x_Contig1750 264 3e-70
3x_Contig1797 214 2e-55
>3x_Contig1092
Length = 2520
Score = 1413 bits (713), Expect = 0.0
Identities = 804/825 (97%), Gaps = 7/825 (0%)
Strand = Plus / Plus
Query: 87 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 147 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 207 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 267 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 327 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 387 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 447 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 653
Query: 507 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 713
Query: 567 caaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 caaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagt 773
Query: 627 cacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattctataa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 cacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattctataa 833
Query: 687 ggatccaattggttgtattgatgttcctgaacgaaattatatatgtaacggggattgttt 746
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 834 ggatccaattggttgtattgatgttcctgaacgaaattatatatgtaac-gggattgttt 892
Query: 747 cacgcatagtgaaagcatctaagctcaagaaattg-gagagtttcccctacaaaat-tta 804
||||||||||||| ||| ||||||||||||||| | ||||||||||||||||| | |
Sbjct: 893 cacgcatagtgaagcaatcaaagctcaagaaattgaggaagtttcccctacaaaatataa 952
Query: 805 catctactta-tatctagcaaaaat-ttaaattccagaatgaatgcttaaaagga-tctg 861
|||||||||| |||||||||||||| | |||| | |||||||||||| |||| || ||||
Sbjct: 953 catctacttattatctagcaaaaatataaaatacaagaatgaatgctaaaaaagagtctg 1012
Query: 862 tcattcaaaatctattccaac-atcccttgtacatggcttgaact 905
|||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct: 1013 tcattcaaaatctagtccaacaatccctcgtacatggcttgaact 1057
>3x_Contig178
Length = 1315
Score = 833 bits (420), Expect = 0.0
Identities = 479/496 (96%), Gaps = 2/496 (0%)
Strand = Plus / Minus
Query: 87 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 146
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 147 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 206
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 207 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 267 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 326
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 327 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 386
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 387 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 446
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 447 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 437
Query: 507 tctattg-aacagagataagcagag-gcgtaacgagaaaattaatcttcaatgggactta 564
||||||| |||| | ||||||| || | |||| | ||||||||||||||||| |||||
Sbjct: 436 tctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgccactta 377
Query: 565 gtcaaaactgtatcag 580
||||||||||||||||
Sbjct: 376 gtcaaaactgtatcag 361
>3x_Contig1750
Length = 14427
Score = 264 bits (133), Expect = 3e-70
Identities = 271/309 (87%), Gaps = 6/309 (1%)
Strand = Plus / Plus
Query: 580 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 639
|||||| |||||||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct: 13515 gttgtaaattgagagtgaattgattatggtcacgggatttaatgggtcacgtgatactac 13574
Query: 640 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 699
||| | ||||||| | |||||||||||||||||| ||||||||| || | ||||||||||
Sbjct: 13575 ttgaataaaggccgcatagccacaactcacttcagaatattctagaatgctccaattggt 13634
Query: 700 tgtattgatgttcctgaacgaaattatatatgtaacggggattgtttcacgcatagtgaa 759
|||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 13635 tgtattgatgttgctgaacgaaattatataagtagc-gggattgtttcacgcatagtgaa 13693
Query: 760 agcatctaagctcaagaaattg-gagagttt-cccctacaaaat-ttacatctactta-t 815
||| ||||||||||||||| | ||||| |||||||||||| | ||||||||||| |
Sbjct: 13694 gcaatcaaagctcaagaaattgaggaagtttacccctacaaaatataacatctacttatt 13753
Query: 816 atctagcaaaaat-ttaaattccagaatgaatgcttaaaaggatctgtcattcaaaatct 874
||||| ||||||| | |||| | ||||||||| || ||||| |||||||||||||||||
Sbjct: 13754 atctaacaaaaatataaaatacaagaatgaatactaaaaagaatctgtcattcaaaatcc 13813
Query: 875 attccaaca 883
| |||||||
Sbjct: 13814 agtccaaca 13822
>3x_Contig1797
Length = 34782
Score = 214 bits (108), Expect = 2e-55
Identities = 163/180 (90%), Gaps = 1/180 (0%)
Strand = Plus / Minus
Query: 580 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 639
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 32556 gttgtaaattgagagtgaattgaatacggtcacgggatctaatgagtcacgtgatgctac 32497
Query: 640 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 699
||| | ||||||||| |||||||| ||||||||| ||||||||| || | ||||||||||
Sbjct: 32496 ttgaataaaggccacgtagccacagctcacttcagaatattctagaatgctccaattggt 32437
Query: 700 tgtattgatgttcctgaacgaaattatatatgtaacggggattgtttcacgcatagtgaa 759
|||||||||||| |||||||||| |||||| ||||| |||||||||||||| ||||||||
Sbjct: 32436 tgtattgatgttactgaacgaaactatataagtaac-gggattgtttcacgaatagtgaa 32378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6739
Number of Sequences: 1807
Number of extensions: 6739
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 4
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)