BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD05RM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1745 1564 0.0
>3x_Contig1745
Length = 19830
Score = 1564 bits (789), Expect = 0.0
Identities = 859/873 (98%), Gaps = 8/873 (0%)
Strand = Plus / Minus
Query: 37 agcttcat-acagtgtctcatgtgtcaagggaagtgtcgaacggttgttaaaaagttcag 95
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9874 agcttcatcacagtgtctcatgtgtcaagggaagtgtcgaacggttgttaaaaagttcag 9815
Query: 96 ttgtatcctcaacgtccattgatgatcaaaacgaggaaaatgcttatagatttggttcct 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9814 ttgtatcctcaacgtccattgatgatcaaaacgaggaaaatgcttatagatttggttcct 9755
Query: 156 ccagcattattgagcttggtaacgatgacgctggttgtcatcgcgcttctacaactacta 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9754 ccagcattattgagcttggtaacgatgacgctggttgtcatcgcgcttctacaactacta 9695
Query: 216 acaggaataatcaatctcagcaccaacaccaaaacgagcaggtcacgtgggtgtccatcc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9694 acaggaataatcaatctcagcaccaacaccaaaacgagcaggtcacgtgggtgtccatcc 9635
Query: 276 aaaagtctctcgctggcgtggtacccagtaggattataaaagtatctgatgatttcttca 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9634 aaaagtctctcgctggcgtggtacccagtaggattataaaagtatctgatgatttcttca 9575
Query: 336 tcaggttgatgctaaaacatagctcgctccttatcaataactttgaaatagatttatttg 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9574 tcaggttgatgctaaaacatagctcgctccttatcaataactttgaaatagatttatttg 9515
Query: 396 atttggaagaagtcttgttcgaatttatgttcattgtcaaatctttgcttccgagtgaac 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9514 atttggaagaagtcttgttcgaatttatgttcattgtcaaatctttgcttccgagtgaac 9455
Query: 456 gtctgccaccttttaataatgcaagtcagttactttcatctaaagagggttccctttatt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9454 gtctgccaccttttaataatgcaagtcagttactttcatctaaagagggttccctttatt 9395
Query: 516 tgatttctatcatcaacttttactttgatatcccaaattttgattatttggagttttatg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9394 tgatttctatcatcaacttttactttgatatcccaaattttgattatttggagttttatg 9335
Query: 576 atcacgtttgctcgaaccaatccaattaccaggttaatcaactgtggttgttcacaaacg 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9334 atcacgtttgctcgaaccaatccaattaccaggttaatcaactgtggttgttcacaaacg 9275
Query: 636 tgattttatacggaccagcatatttcagctcaaaag-tacgcagttctctctaccgtcct 694
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9274 tgattttatacggaccagcatatttcagctcaaaagttacgcagttctctctaccgtcct 9215
Query: 695 cgtgtctaccattacanatgcagtgtacgggatcctcgntgtccaatgacttaagacctg 754
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9214 cgtgtctaccattacaaatgcagtgtacgggatcctcgttgtccaatgacttaagacctg 9155
Query: 755 catttgctaaactatattattcttccgacttc-aatttcattgtcccaaa-tgtacacct 812
|||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct: 9154 catttgctaaactatattattcttccgacttcaaattccattgtcccaaattgtacacct 9095
Query: 813 tgcangaaaaattcgcta-tttcaa-gaagatccattgntgcaattgattgaattc-agt 869
|||| ||||||||||||| |||||| | |||||||||| ||||||||||||||||| |||
Sbjct: 9094 tgcaggaaaaattcgctattttcaagggagatccattgttgcaattgattgaattcaagt 9035
Query: 870 gtaaaccacaaaggatagtt-atggaaactcaa 901
|||||||||||||||||||| ||||||||||||
Sbjct: 9034 gtaaaccacaaaggatagttcatggaaactcaa 9002
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6784
Number of Sequences: 1807
Number of extensions: 6784
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)