BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD06FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig788 1277 0.0
>3x_Contig788
Length = 2349
Score = 1277 bits (644), Expect = 0.0
Identities = 688/700 (98%), Gaps = 2/700 (0%)
Strand = Plus / Plus
Query: 86 ttcccatataacttccgcaaaccatggatgcgatttgatatcatctggcccgctttgtaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttcccatataacttccgcaaaccatggatgcgatttgatatcatctggcccgctttgtaa 325
Query: 146 gttacctaatctacgggtcaaatctgcagtgatcaacttacctaatagatccacaacatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttacctaatctacgggtcaaatctgcagtgatcaacttacctaatagatccacaacatc 385
Query: 206 agggtggaaaaatggtggataaacgacttcaccagctaagattttctcataggtcttcat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agggtggaaaaatggtggataaacgacttcaccagctaagattttctcataggtcttcat 445
Query: 266 tggcgtaacatcataaaatggagtataaccagcgagcatttcgaagattaagattccaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggcgtaacatcataaaatggagtataaccagcgagcatttcgaagattaagattccaag 505
Query: 326 agaccaccagtcaacagacttgttatatggtttcgttgtaattacttcaggagcaatgta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agaccaccagtcaacagacttgttatatggtttcgttgtaattacttcaggagcaatgta 565
Query: 386 atcaggggtaccacataacgtccacgtcactgtgattacctctttggcgaacccaaaatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atcaggggtaccacataacgtccacgtcactgtgattacctctttggcgaacccaaaatc 625
Query: 446 cgttatcttgatatgcccattcctatccaatagaatgttttctggcttcaagtcacggta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cgttatcttgatatgcccattcctatccaatagaatgttttctggcttcaagtcacggta 685
Query: 506 tattatgttatgagaatgtaagtattccaaagctaaagtcacctctgctgcataaaactt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tattatgttatgagaatgtaagtattccaaagctaaagtcacctctgctgcataaaactt 745
Query: 566 agccacagggttggggaatcgttgggattttctgagcaacgaggacaattcaccaccttt 625
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 746 agccacagggttggggaatcgttgggattttctgagcaacgagaacaattcaccacc-tt 804
Query: 626 cgatataattcataaccatgaattgattacgagaattctggaacctaccccacattccga 685
||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||| |||||
Sbjct: 805 cgatataatccataaccatgaatagattacgagaatcctggaacgtaccccaca-tccga 863
Query: 686 attaagaaaggatgttcaaccagctttaccatccgcctttcatcattcgtatgctcaatt 745
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 864 attaagaaaggatgttcaaccagctttaacatccgtctttcatcattcgtatgctcaatt 923
Query: 746 tgcttcattcgaatgatttgaaatttttttaaaactttga 785
||||||||||||||||||||| |||||| ||||||||||
Sbjct: 924 tgcttcattcgaatgatttgatgttttttcaaaactttga 963
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5955
Number of Sequences: 1807
Number of extensions: 5955
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)