BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD07FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1170 0.0
>3x_Contig1801
Length = 57606
Score = 1170 bits (590), Expect = 0.0
Identities = 702/722 (97%), Gaps = 13/722 (1%)
Strand = Plus / Plus
Query: 86 tgtattgccattggtgagagatggacaatttcaagaactactgctcaagacattcaaatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39849 tgtattgccattggtgagagatggacaatttcaagaactactgctcaagacattcaaatt 39908
Query: 146 agattcccaccaaccgacgttgtggcttctgtcgcggagccagttccaaccttgctttca 205
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 39909 agattcccaccaaccgacgttgtggcttctgtcgcggagc-agttccaaccttgctttca 39967
Query: 206 gtgagatgtcctcaggtagataacattgccaatttgcttaaacactgcaaaaagaacgaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39968 gtgagatgtcctcaggtagataacattgccaatttgcttaaacactgcaaaaagaacgaa 40027
Query: 266 gtgatttt-aacctcaagcaacaacatgtcaaattctgcaacacagctgaccttggggtc 324
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40028 gtgatttttaacctcaagcaacaacatgtcaaattctgcaacacagctgaccttggggtc 40087
Query: 325 caattcatcatcaattttgagtaataacgtttcaaatatgtcatttagcaggtccagtac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40088 caattcatcatcaattttgagtaataacgtttcaaatatgtcatttagcaggtccagtac 40147
Query: 385 tgcttcgaacgatttatcacatggttggtcgaaaccgcaagtactagattccagtaaaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40148 tgcttcgaacgatttatcacatggttggtcgaaaccgcaagtactagattccagtaaaga 40207
Query: 445 ttgtaaatcactgctgttattatcaaaaattaaggtgcgattacataaatatgaccagca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40208 ttgtaaatcactgctgttattatcaaaaattaaggtgcgattacataaatatgaccagca 40267
Query: 505 atacggatggaagatgactaaagttggattgttgaatgtttactctagagaatataatgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40268 atacggatggaagatgactaaagttggattgttgaatgtttactctagagaatataatgg 40327
Query: 565 atcagttgctggatgtaaatttgagatggatgacaccgagtcgttcatttcattcatatc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 40328 atcagttgctggatgtaaatttgagatggatgacaccgagtcgttcatttcatccatatc 40387
Query: 625 ggaccntgaagagaattggaagggact-gtatctcagctggagaacgtctagtagagttc 683
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 40388 ggacc-tgaagagaattggaa-ggactggtatctcagctggagaacgtctagtagagttc 40445
Query: 684 aaaaatcaaaatgttgcttgaccagacctattaattggtaggtgcttctgtaattacgaa 743
|||||||||||||| || |||| |||||||| ||||| ||||||| ||||||| |||| |
Sbjct: 40446 aaaaatcaaaatgtagc-tgacgagacctataaattgctaggtgc-tctgtaaatacg-a 40502
Query: 744 aacacttgtggatgtgtcctgaaaatttacctttggaattcccaaacctcttagttataa 803
||||||||| ||||||| ||||| | |||||||| ||||||||||| |||||||||||||
Sbjct: 40503 aacacttgt-gatgtgt-ctgaata-ttaccttt-gaattcccaaa-ctcttagttataa 40557
Query: 804 ac 805
||
Sbjct: 40558 ac 40559
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6591
Number of Sequences: 1807
Number of extensions: 6591
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)