BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC47ZD07RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 680 0.0
3x_Contig849 276 7e-74
>3x_Contig1512
Length = 8803
Score = 680 bits (343), Expect = 0.0
Identities = 346/347 (99%)
Strand = Plus / Minus
Query: 49 gcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccag 288
Query: 109 atatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatctt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatctt 228
Query: 169 acatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaagg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 acatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaagg 168
Query: 229 ctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatg 108
Query: 289 ccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgcca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgcca 48
Query: 349 ttagagactgtgacaaagccatcgagaaggatccaaactttgtcaga 395
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 47 ttagagactgtgacaaagccatcgagaaagatccaaactttgtcaga 1
>3x_Contig849
Length = 3479
Score = 276 bits (139), Expect = 7e-74
Identities = 225/249 (90%), Gaps = 4/249 (1%)
Strand = Plus / Minus
Query: 613 cagaagttgcatcaattntacaagaccctgtca-tgcaatctatactctcacaagctcag 671
||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3479 cagaagttgcatcaattttacaagaccctgtcaatgcaatctatactctcaaaagctcag 3420
Query: 672 caaaaatcctgctgctttacaggaacacatgagaaaccccgacgtctttcagaagattca 731
||||| ||||||||||||| ||||||||||||||||||| |||||||| |||| |||||
Sbjct: 3419 caaaa-tcctgctgctttaaaggaacacatgagaaacccagacgtcttcaagaaaattca 3361
Query: 732 aaccttgatcgncgctggtatattcaagacttgctagttctacagacagtcagtcttatt 791
|||||| |||| |||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 3360 aaccttaatcgccgctggtataatcaagactcgctagttctacagacagtcagtcatatt 3301
Query: 792 actcgacctgaaac-tcaacaatgaattagattttattcccccctatgtttagcattaaa 850
||||| |||||||| ||||| ||||||||| | ||| | | ||||||||||||||| ||
Sbjct: 3300 actcgccctgaaacttcaac-atgaattagtatatatacacgcctatgtttagcatttaa 3242
Query: 851 ttctcttcc 859
|||||||||
Sbjct: 3241 ttctcttcc 3233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5695
Number of Sequences: 1807
Number of extensions: 5695
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 2
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)